RNA id: XM_036965040.1


Basic Information

Item Value
RNA id XM_036965040.1
length 4057
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110504398
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62705451 ~ 62712740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCCAGGTCCAACCTCCTCTCGCCAGAATACCCCAGGTCCAACCTCCCCTCGCCAGAATACCCCAGGTCCAACCTCCTCTCGCCAGAATAGCCCCAGAGCAGCAATTGCAGACCCCAGGGGACTGCCAGCAGCTcacaactactaccactattcctacaactactaccactattcctacaactactaccactattcctacaactactaccactattccCAGAACTACGACTACcactcctactactacaacagTCTGGAGGAATCCTGGGCTAAATGCCATCCCAGACTCACATGGTAGTCGCTACCGCCCCCCACCTTACCCCAACGACCCACAACACCGTATCACTAGGCCTGACCCAGTCAGAACTCCACCCCCAATAAAACACGCACCCTCTCTCCCACAACGTGCCAACCCCAAACTTCTTCTCCCAGACATTTTAGAGACCCCTTCCTCTGCAGTCCTCACCACAAGAGCTCCGTCCAGCCCTCCCAAGATCTTCCCACCCACCACAGACCCTCAGGCCGGGGTCAACACTGGCTCTACTCCTCCtcgttcccctcccctctctccacaccgTAGTGTGACTGCCCAACGCCCCCCTCAGACCCCTGTCCTGCGTGTCAGGCCCCTTATCACTCCCCCCCACGTACGCTCCATGTCTGTCCCAGCTGAGAGTGACGCCCTCCTGCCATGCGAGGCCATTGGACAGCCTCCTCCGACAATCACCTGGATCAAGGTCTCCACAGGAGCTGTGATATCACTGGACACCAAGGCAGAGCGTTTCCAGGTCCTACCCAACGGAACCTTTCTCATCCGGAGTGTGCAGGTCCAGGACCGGGGGACATATATCTGCAGCGCACAGAACTCTGTGGGTCTTGACCGCGTGATGGTGACTCTGGAGGTCTGGTCCCGCCCACCACGCATTCAGTTACCCACTCACAGAGAGGTCACGGTGCACCAGGGGggagaggtgaggtgggagtgTCGGGCTCAGGGGGTGCCTGTCCCTCTGCTGTCCTGGGTGCTACCTGACCGCTCCATCCTGACCCCCGACCTTAACTCCAACCCTGCCCATGGCCCTCACCCCCGGGTGTCTATATTCCCTAATGGTACTCTGCGTATTGTGGCTGTCGGCCCAGCCGACAGAGGACTGTATCGCTGTGTAGCCTCCAACCCAGCAGGGGCTAGCAGTCTGTCAGTCCGACTCCATGTCTCCTTCCTGCCTCCAGCCATCCAGCAgccgagagaggagagggtaaccCAGCCAGCTGGCATGCCTGTCTACGCCCACTGCTCTGCCCGGGGGGCCCCCGTTCCCTCCATCCGCTGGAGGACCCCAGATGGTACGCTGCTGCTCCCCTCTCAATTCCTCAACGGGAACCTGTTTGTCCTCCCCAACGCCACCTTGCTGATACGCAAGCTTTCCACTAAGGACTCTGGGAGCTATGAGTGCCTGGCGACTAATGCAGTAGGCGTGGATAAGAGGACGGTGAGGGTGTTGATGACTGgagatgaaggaggaggtgtTGTCTCCACAGATAAAACTACATCCTCCTCTTCCATTAACAGTAACTCTGACCTGAACCCCTCCTCAGCCGTCCTTAACCCTCCTCTCCggccctcctcccccctcagtaAGGCTAagatcctctccacctctccatccagTTCTATAGTTGTATATGGAGAAACTCTGCTCCTTCAATGTTCAGTAACCGGCAACCCAGAGCCTAGAGTGGTCTGGAGGGTACCTGGCAAGAAACTAGTGGATGCCCACTACAGTTTTGACAAGAGGATGAAGGTACACAGTAATGGAACGCTGTATATCCAGTCTATGACAGAGAAAGACGGGGGAGACTATTTGTGTGTCGCACGAAATAAAATGGCTGATGACTACCGCCTCCTCCGTGTCACCGTGGTCACAAAGCCCGCTAAACCCGCTAAGATTGAGCCAAAACAGCCATCCAATCAGAAGGTGGTATCGTATGGAGCAGCTTTAAAGGTAGACTGTCTGGCCACCGGGCAGCCTGACCCCGCAGTGAGATGGAGCCTACCGGACGGAACCTCAGTGAACAGCGTACTGTTGCAAGGGGACGAGAAAGGGGGACGGAGGAGGCGGCTGGTGGTGTTTGATAACGGGACTCTGTTCCTCCCGTCAgtggggatgggggaggagggggagtacGTCTGCCACGCTGAGAACCAGATGGGGagagactccatgagggtgatgATCAAAGTCCTTACCTCACCCCCTTCCTTCCAAAGAACGAGATATGAGGTCATCAAGGTGCAACAAGGGGGCGTGGTGGCTCTGAACTGTGGGGCCAAAGGAGAGCCCATCCCTACAGTCACATGGTTCTCTCCAATCAATCGTGTCATCCCTGTGGGGGGGTCCGGTCCAGTTGTAGTGCGGCCAGATGGCTCCTTGGTGATCCAGGGGGCTAGAGGGGCTGACGGAGGAAACTACACCTGCCGAGCCAGCAacgtggctggggagaggagcaggaTGATGGGGGTGGAGGTGAGCGTGACCCCACCCAGCTTCACTCTCAATGGGACTAGGGGTGGACTCGatgggacagacagacatacagctgTTGTTAGCAGTAGTGGACTCAGTACTGTGATCACCATCAGTCAGTCTGCAGGGAGGGTTCAGTCGGGCAGGACTGGTAATGGTGTCATTAATAATGAAGTTAGTCATAATGGAGTCAGTAATGTAGGGGACCAGAGGGTCTCAGCAGTAAGAGGCCAGACAGTTATTTTGCCCTGTCCATCCCAGGGCTTCCCTCCACCCCGCTTGGCCTGGTTGCTGCCTGGTAACGGGGTTCTCCCGGCGCCTTACTACGGCAGCAGACTCAATGTGCACCGCAACGGAACCCTGGAGCTGAGGGGGGTGAGGGCAAGCGATGCTGGCCTGCTGGTGTGTGTTGCTCGCAGTGAGAGGGGCGAGGCTCAGATAATGGTACATCTAGAGGTTTTAGACACACAGGACCCACCTCGCTCCAGAGGCCCAGTGACCACAGGGAAACCTCACCCAGTAGGCCCAGTCAGCACAGAGAAACATCGTCCAGTAGGCCTAGTCAGCACAGAGAAATCTCGCCCAGTAGGCCTAGTCAGCACAGAGAAACCTCGCCCAGTAGGCCCAGTCAGCACAGAGAAACCTCTCCCAGTGGGCCCAGTTAACATAGAGAAACCTCGCTCAGGATTCACATTTACAGAGGAGACACCTCACCCCAGAGGCCCAGTCACTACTGAGAAACCTCACTTAGGAGGCCAAGTCAGCACAGAGAAACCTCGCCCAGTAGGCGGGGATAAGAGGACAGTACCAGGAGTTTCATTCCGAGGGGATACACCTCACCCAAGAGGCCCAGTGTCAGAGGCAGCAAGGAGTGTCATCCCAGAGAGGAAGCCTTTGGTCATCAGCAGATCAGCTTCGCTGGTCAGCATCATAAGCGGAGAGAATCTACGGCTACCCTGTCCCCAGACAGACAGCCCCAGTCAGAGTTCCAGCCAGACCCAGTCTCTGACCTGGACGTTGCCCAGCGGGGGGATCGTGTCTCGGGGCCAGACAGCAGGGACGGGTCAGTACTCAATCCTGGATGACGGGACTCTGACTGTGCAGCAGGCGTCTGTGTTCGACAGGGGGACCTACTCCTGCCGATCCACCAATCAGGACACCTTGTCTATCCTAACAGTTCCAGTGATTGTCATCGCCTACCCCCCTCGCATCACCAACGGCCCCCCTCCCCTGACCTACACCCGGCCCGGAGTTGCTGTGCAGCTCACCTGCTACGTCATAGCAACCCCCCGAGCGACCATCACCTGGGAGATGCCGGACCAATCCCAGCTAAGGGTCACAGGTCAGGCCCGTCTCTATGGCAACCGGTACCTGAGCCCCCAGGGTTCCCTAGTGATCCAGAACCCGACCAGCAGAGACACTGGGTTCTACCGCTGTACTGCACGGAACGCCATTGGAACCGACACCAAGGCCACTTATCTACATGTgatctaacagaacacacacacagtgagacctGGTCCTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321875 lncRNA upstream 34963 62670211 ~ 62670488 (+) True G283840
TU321871 lncRNA upstream 41742 62663380 ~ 62663709 (+) True G283836
TU321867 lncRNA upstream 50297 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 55107 62649487 ~ 62650344 (+) True G283817
TU321848 lncRNA upstream 100095 62598750 ~ 62605356 (+) True LOC110504388
TU321896 lncRNA downstream 403 62713143 ~ 62713848 (+) True G283860
TU321895 lncRNA downstream 2116 62714856 ~ 62715183 (+) True G283859
TU321903 lncRNA downstream 9555 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 35688 62748428 ~ 62750633 (+) True G284045
TU322111 lncRNA downstream 51181 62763921 ~ 62768887 (+) True G284057
XR_005051351.1 mRNA upstream 4238 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 56936 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 58499 62623416 ~ 62646952 (+) True LOC110520352
XM_036974875.1 mRNA upstream 92976 62598699 ~ 62612475 (+) False LOC110504388
XM_021597616.2 mRNA downstream 70506 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 145473 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 234578 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 234578 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 400927 63113667 ~ 63119407 (+) True LOC110520363
TU320883 other upstream 296594 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 508500 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 743976 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1668346 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1811673 60891524 ~ 60893778 (+) True G281714
TU322433 other downstream 303586 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 413150 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 554379 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 678191 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 993828 63706568 ~ 63722064 (+) False G284986

Expression Profile