RNA id: TU321897


Basic Information

Item Value
RNA id TU321897
length 430
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC110504398
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62705451 ~ 62712740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACCACCAGCAACTGATGAAGAACACAGTGAGATGGAACCAGTCTATCTAGCACCTGATAAACCAGAGGAGAGACAACCAGAGTCAGAAATAAACAGCTCTCTTTCatctacaacacaactactgtcCCCAAACTCAACTGATACAGCAGCTACCACTGTTTCAGCCATCACCTCCTCTACAGTCATCACCTCCATTAGAAGAACTAACACTATAACTATTCCTACAACTACTATTCCTACTACCACTTTTCCCACAAATACTACCACTAttcctacaactactaccactattcccacaactactaccactattcccacaactactaccactattcccacaactactaccactattcccacaactactaccactattcccacaactactaccactattcccacaactactaccactattcctacaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321875 lncRNA upstream 35843 62670211 ~ 62670488 (+) True G283840
TU321871 lncRNA upstream 42622 62663380 ~ 62663709 (+) True G283836
TU321867 lncRNA upstream 51177 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 55987 62649487 ~ 62650344 (+) True G283817
TU321848 lncRNA upstream 100975 62598750 ~ 62605356 (+) True LOC110504388
TU321896 lncRNA downstream 6173 62713143 ~ 62713848 (+) True G283860
TU321895 lncRNA downstream 7886 62714856 ~ 62715183 (+) True G283859
TU321903 lncRNA downstream 15325 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 41458 62748428 ~ 62750633 (+) True G284045
TU322111 lncRNA downstream 56951 62763921 ~ 62768887 (+) True G284057
XR_005051351.1 mRNA upstream 5118 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 57816 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 59379 62623416 ~ 62646952 (+) True LOC110520352
XM_036974865.1 mRNA upstream 93856 62598677 ~ 62612475 (+) False LOC110504388
XM_036974868.1 mRNA upstream 93856 62598677 ~ 62612475 (+) False LOC110504388
XM_021597616.2 mRNA downstream 76276 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 151243 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 240348 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 240348 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 406697 63113667 ~ 63119407 (+) True LOC110520363
TU320883 other upstream 297474 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 509380 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 744856 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1669226 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1812553 60891524 ~ 60893778 (+) False G281714
TU322433 other downstream 309356 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 418920 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 560149 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 683961 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 999598 63706568 ~ 63722064 (+) False G284986

Expression Profile