RNA id: XM_036974891.1


Basic Information

Item Value
RNA id XM_036974891.1
length 2884
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110520359
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62947318 ~ 63007919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTTATATTTTTCTCTGTGAAGAGGAGCTACTCTGGATCACCGGGCATGCACACGGCGGACTGAAGACAGAGAGATTAACGGAGGATCTGTTACAGAGGTTTTGATATCGGTGATGCTTGTCAGACTCACCAATACAGTCTAATCATTAGGCTACAGCAGTCCGTGCAGACAGACCACAGCATTGCTCCGACCATCACTCTGTCGTGGAGATACAGAGTAAGACCTGTCCCGTCGAAAACCCCGCTCTACACGCAGgggaaGGTGAGAAGATGTTTCAGAAAGGAAGTCACATAgagtccctcttcctctgtttgtTGTTGgtgtcctgtcctccctgtctcaggTCAGAGTACAGTAGTTGTGGAGAGTTTGAATTCTACAACCAGACCTTCAGTAGCTGCCGGCCCTGCCCTCCATGCCAGCCTGGACAGGAGCCCCACATGAACTGTGGCTATGGGACTAAGGATGagaactttgtgtgtgtgtcttgtcctGCGGGGAAGTACTCAAAGGGGAAGTATGAGATCTGCAGGAGACATAAGGACTGTGAAGGTCTGTACCGCGCTACAGTACTCACACCTGGGACACCAGACAGTGACGCAGACTGTGGACCCTGCTTACCCGGGTATTACATCCAGGAGAACCGGCCCAGGAACCTGTATGGGATGGTCTGTCACTCGTGTCAGAACGCACCGCGCAACACTAAAGAGTGCATGCTTACCAAAGTCCCCAGTGTCTCAACCAGCAGTACTACCATGTTCCCTCACCCTCACAAAGACGCCACAGGACAGGGTCACCTAGCAACCGCTCTCATCATTGCCATGTCAACCATCTTCATCATGGCCATCGCCATCGTCCTCATTATCATGTTCTACATCCTCAAAGCCAAGCCCAGCGGACAGGCGTGCTGCTCAGGTCAGGTGGTGAAGGCTGTGGAGGCTCAGACCAACAAACAGGAGGACAAGAAAGATGTTCCAGacAACATTGTAATTTTCTCTGAAAAGGATGAATTCGACAAACTCAAACCCACGCCTCCGAAGACGGTGAAAAGTGAGAATGATGCATCGTCAGAGAACGAGCAGCTGTTGAGTCGTAGTAtggacagtgatgaggaggcagCGTTGGAGAGGCAGGGGGCGGCTGATCCTAACCCCAGCCTCTGTCTTCTGAACCTGGGCAACAAGCCGGACCTCTGCCTGCTCTCTCTGGGGCTTCTCGACAGGGATAAGACTGGATCCAACCCCACCAGCCCTATCAACGCTAACATTAGCAATGGCAATGCTAACATCATCaataacaacaactacaacaaggCTACAGGGATTCAGAGCCGGAGGAAGAAGATCCTGGATCTGTATGCTAGAGCCTGCAGTGTGGCCGAGGGTCTGAGTCCTACAGAACTACCGTTTGACTGTCTGGAGAAGGCCAGTCGGATGCTGAGCTCCTCCTACAGTAGCGAGGCAGCCGTGGTGAAGACCTGGAGACACCTGGCAGAGAGCTTTGGCCTGAAGAGGGATGAGATCGGAGGGATGAGTGACGGCCTGCAGCTGTTTGAAAGGATCAGTACCGCCGGCTATAGCATCCCAGACCTGCTCACCAGACTAGTGCAGATAGAGAGACTGGATGCTGTGGAGTCACTGTGTTCTGATGTACTGGgaggaggagacacacacactgttcctctGTCCTCACCACGCTGTGCAAGCGTCTGACtcccacacacacatgaacacacgtTTATGCACAGATGCAGTACACCCATgtgcacatacccacacacatacattcacaatCAAACACCCATACCCCTCCACATGAAGAATGCCAGTAGGCCTTCCTAGATTTcagatctctctccttctcttccgtctctctgtctccctctggcAATTAACTTTGCGCTGGATGCCTCGACAAAAGcttttgataaaaaaatatatagagatTTTATATAAATTACATTTTGTACATATTATAATATGAGATTTTGAAAAGGGCATAATGGACCTCTCTCTGCCAGGATCCCCATGGCTCCAGatcctctcaacccccccccccagcggTCAGCTGCTACCGCTGGCTCTAATTGGTTGACTTGTGGCAGTCTGATCTAATAATGTTGTGGTTTACAGTCGAGACTTTCAGCACCTAATTAACCACTAAAACCAATGAACCAGTAAATACCAGATGCCAGAGACCATTAAAGAGCTTAGCTTATAGACAGACTAAGCCTTCTGCAGCCTGAGAAATGCAGGAAAACAGGACACCAGAAGACCCAGCGCTACACTACACTATGGTCAGCCTGGCTCTGATGCTATTCTGGGTGATGCCACAggacggcagccattttgtgccatTCAGCACATATCAGCTAATGGTGATAAGCTCCTAGCTAAAGACATTTCAGGAACAAGAGAATGTGTGTTTGGTTTATATGGTTTAAACGGTGGCTTTCTATACCTCCATGTATATTGTTTCTGTTGAGTGACTGGGGAGGCACAATCCCATCTCTCAGTGTGTCTTCACTGCTCTGCTGTTTCAAGTTAGCCACGTTTAAAGGGTCTGGACTCCGGTAGTGTATATGAATCATAAATGTGCATGTACAATGCTCATCATTTAGCAGGTATCCATAATGGCTTCTTTTAGTTTATCCTTGTTCTTTCCAATCCAAACACAGCATCAGCGGAAGGCTCGTAGGTTAGGTAGGTCGCTGAATGACAGAAGATGAttgactgtactgtatgtacagaacCTGGTTCTCTTACCTCAGTATCACAAAGCTCCATTAGACTACAGAAACTATTTTTCATGGAAACAAACGTAAGTGTATATATAACTTAttattgtacatactgtatgcatcAATAAAGAAGTATCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322294 lncRNA upstream 11221 62933377 ~ 62936097 (+) True G284206
TU322286 lncRNA upstream 28080 62918481 ~ 62919238 (+) True G284198
TU322251 lncRNA upstream 83590 62862746 ~ 62863728 (+) True G284174
TU322165 lncRNA upstream 114904 62832079 ~ 62832414 (+) True G284096
TU322164 lncRNA upstream 115681 62831419 ~ 62831637 (+) True G284095
TU322466 lncRNA downstream 59030 63066949 ~ 63067154 (+) True G284345
TU322467 lncRNA downstream 59306 63067225 ~ 63067470 (+) True G284346
TU322476 lncRNA downstream 67829 63075748 ~ 63076164 (+) True G284355
TU322487 lncRNA downstream 89067 63096986 ~ 63097218 (+) True G284366
TU322475 lncRNA downstream 116889 63124808 ~ 63125815 (+) False LOC110520364
XR_005051352.1 mRNA upstream 86820 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 134237 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 234578 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 246105 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 298803 62622919 ~ 62648515 (+) False LOC110520352
XR_002472972.2 mRNA downstream 105748 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 116461 63124380 ~ 63129015 (+) False LOC110520364
XM_021597627.2 mRNA downstream 165317 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA downstream 165324 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA downstream 165324 63173243 ~ 63204595 (+) False LOC110520366
TU321897 other upstream 240348 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 538461 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 750367 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 985843 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1910213 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 8407 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 117971 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 259200 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 383012 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 698649 63706568 ~ 63722064 (+) False G284986

Expression Profile