RNA id: XM_021597622.2


Basic Information

Item Value
RNA id XM_021597622.2
length 2433
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110520360
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63011134 ~ 63025281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCCTCAGGATGACAGCAGACTTGTAGGTTTTTCATTTCCGGTTTAGGAAAAATGCACATAATTCAAACTGACAACAAGTTGACTGCTTTTGGCGTTTGTTGAAAAACAATACATCTGTGTGAAATCTCAAGATGAACAAGGAATCGTCAGGGAGCGAGTTGGACGTTACGGTTGAGAGGCTGAAAATGAAATATCTGGAAAGGAAACGGGTCTCTACAGAGCAGAAAGCACCTGCGCTGAGTGGAAGACACTACCATGGTGGGCAGCAGAGAGTTGTGAAGTCCCCCAGGTCTAGACGCAGCACCACCAGGGAGATGAGCGGTTACAATAGAGCCTTACAGGAGCTGTTCCAGGCTGTCACCAACCCTCCAGACAGGTTGTACAGTGACTGTAGTCGGGATGACAGTGAGGAGGACCTGAGTGAGAACTATATTTTCAGCCCTCTCCTGGACACACAGACCCACTACACAGAGACAGATGTGACCCTGCCCTCCAGCCTAGCCCGTACCTTGGGCTCCCGAGAGACTGAGTCCACCGTAGGCCTGGCCAGagaagaggaggtgaggggggagaaagaggagagaggggtgaggcagAAGCagtcctcccctgtcctctccccctcctgCCCCTCAGTGATGGGACAGGTTTACCAGGAGATGCTGCACATCTACCAACAACTACAGGCAGAACGTTTGAGCCAGCTGCAGTGGTCGGCCCAGCtccaggacagagagaacagactgctACAGCAAGAGGAGAGCCGCAGTGAGGAGGTGAGTCAGCTACAGGAGCAGCTGagtgagagaaccagagagaacaAGAGGTTAAAGTCCAGCTTCAACTCCATCAAGGAACTCAATGACAACATGAAGAAACAGCTGAATGAGCTGAGTGAGCAGAACAAGCGTCTGGAGAACCAGTTCAGGAAGGTCCAGGCTCGGCTAGAGAACCTTCAGaggaaGTATGAATACTCCATGgcacagaaggggagagagaacgtTTGTCAGAAGGCCATTGAGTCCAAACCTGAGAAAAAAGCCACCTCCAAGCCAGCCAAGGGTAGTGTAAGTCCCACCCCTCTCAGGCTGCTGGCTTTGCTATTGGATTGGATTCTAGACAGACAGACGTTTCCTCCAGTAGCAGGAGACAGCAGAACAGCCCAGGGTCAGCAGCACACGTCTCCAGTGGTCTCTCTCCTCGACAGGTGCTCGAAGGTTTTGCCTCTGTTGGTTGAGCAGCTGCATCAGTCCTCTGCATCACCAGACCCCTCTGGTACCCTGTCCCTGATCAAGTTTATATACTGGAGCCTGAGAGAGATAGACAACAGCATACAGCCGGTGGCTCTGTCGTCCACTTTACGGCGTCTGGGGGAGGAGATGTCCAGGGTTCCGACCCAGCAGCAGGACCCCAGTGGCCCTCTGAAGACCAGGggccctcctctacctccctcgtTGTACAGGAGCCTCTGTCCCCACACACgtctcctgtcctccctcatcATCCTCAGGACCGTCACCCAGGCTGACATCCTAGCCCAGGTGTTGGACTCCCTCCACAGTGACCTGGTGTGTGTGGATGTCCGGGGGCTGTTTCTTCAGTACGGGGGAGTGTCTGTCCTCCTAGCCCTGCTCCGAGGAGGGAAGGGGGGGCTGCAGACCCCCCTAGACATCCTACTGCAGCTCAGCACAGAGTCTCGGTATCTGTCTGAGTTCCTGTCTGCTTGCAGCACTGAAGAGTTCTTCCGTACTGCAGCTCTCCTTGTGAAGAACCCCAGACTAGAACTTCCTCTTCTGGAGAAACTCTCCATCATCCTACAGAAACTCTCCAAGATCAGGAAGAACAGGCGGCTGTTTGAGCTCTGCTCTCTTCATCTGCTGCTGCAGGAGATGCACAGAACAACTGACCCTACACTCACCTTCTTGTCATTGAACCTTAGCTCTATACTTCTCaatctgaaataacacacactcacacgtatAACCTTATTGTGGAGGTGACTTTTTATTTTTGTCAAGTTTTGTAATATGTTTTTATATGATCTTAACCTATATATTGTACCTTGTTTTGAACATGTTTACCATCTGCTATGAAATGAGCATCATGTTGGGAGAGGCTATGATTGTCTCATGCATTCTGAGGTAAAGATGATTTCACTAGGAAGCTTTTAAAAGCAATAAACTAAGAAATGATGGGAAACAGTGTTCGATTTCTCTGTCTTATAGTTACGAAATACATTAGTTTATGTCACATATgttttctataaacctgtttgtTTGTTATGGACCTAAGCTGGAGGTTTTTAACAAGTCCAGAATGGTTCTGTTTGGTGACGGTGAGGAGAATATCACACTGACAGACATTTCTGATCTCTCCTCTGTAAAGAGCCCTGTTAGTCAGTATGTTGAATAAAACATCTAATTGAAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322375 lncRNA downstream 74999 62933280 ~ 62936135 (-) True G284267
TU322363 lncRNA downstream 91889 62918506 ~ 62919245 (-) False G284258
TU322364 lncRNA downstream 91889 62918506 ~ 62919245 (-) False G284258
TU322365 lncRNA downstream 91889 62918506 ~ 62919245 (-) True G284258
TU322347 lncRNA downstream 107994 62902316 ~ 62903140 (-) True G284244
TU322581 lncRNA upstream 45345 63070626 ~ 63071625 (-) True G284448
TU322585 lncRNA upstream 56073 63081354 ~ 63081556 (-) True G284452
TU322586 lncRNA upstream 57748 63083029 ~ 63083228 (-) True G284453
TU322590 lncRNA upstream 62670 63087951 ~ 63089637 (-) True G284457
TU322591 lncRNA upstream 64522 63089803 ~ 63090207 (-) True G284458
XM_036974886.1 mRNA downstream 67616 62869748 ~ 62943518 (-) True LOC110504409
XM_021597620.2 mRNA downstream 152139 62855879 ~ 62858995 (-) True LOC110520358
XM_036974883.1 mRNA downstream 157220 62841460 ~ 62853914 (-) True LOC110520356
XM_021597617.2 mRNA downstream 157252 62841460 ~ 62853882 (-) False LOC110520356
XM_036974884.1 mRNA downstream 157509 62841460 ~ 62853625 (-) False LOC110520356
XM_021597623.2 mRNA upstream 3597 63028878 ~ 63056733 (-) True LOC110520361
XM_036974898.1 mRNA upstream 74793 63100074 ~ 63115360 (-) True chmp2ba
XM_036965051.1 mRNA upstream 139013 63164294 ~ 63167048 (-) True LOC118944692
XM_036974896.1 mRNA upstream 241837 63267118 ~ 63280956 (-) False epsti1
XM_036974893.1 mRNA upstream 241837 63267118 ~ 63282962 (-) False epsti1
TU322065 other downstream 295957 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5421951 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5607559 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5713372 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7599647 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1944268 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1988978 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2029419 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2029419 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 2209899 65235180 ~ 65235908 (-) True G286953

Expression Profile