RNA id: XM_021597625.2


Basic Information

Item Value
RNA id XM_021597625.2
length 2275
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110520364
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63124380 ~ 63129015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCAAATAGACATGCCACACCCAATGGGTTAAAATTGTAACATAAAATTAAACACAGTCCATGACACAATACTGGATATTTACATTCACTTATCTGACGATGCTCACAATTTCAATTCACTGAAAGCCTCCCAATTCTACCTTCAAGAGGATGCCACACTCATACCTCACCTCTCTTCCTCCGAGCCGCGGGTATGCGCTCAGTGGGCGTGTACGCGCAGAGTCccatccctcctgtcctctccataGACCATAGTACCGTTAAAACATTCCTCCAATCAGAGTCGCTTCTAAGAACTTTGCAAAGTGGAGTATGTCGGGTACCATATGTTCGCTTTCACTCGGGTTTGGTTCGGCTCAGTAGGAGGTGTTGGTCCTATTGGCTCGACATTGTCTTTATGCAAACAGCTCCTTTCACCGACGCCATGTCTATTGTCACCGCCAAGGTTTATATGGAGGCAGCGGTGGACCTAAGGATTACACCCGTCTGAGGAGCGCTGATTCAGGCTGTTTCTCTTTGAGCCCCTGACAGCTTCGTCACAGTCATGAGTTGTCTGGATGTGATGTTTCACCAGAGTTATGGAGGACACTACCTCCCTGCGTCTTCAGCAGCAGCAGCCTACAAAGCAGCATACTATCACCATCAGCACCAGCAACAGAAGAAGCTGGGTGTTTACAGTAGGATGCAGCAGGACAGCACCGAGCAGCAGTTTCCAGGGGGGAGACAGCAACAGCAgcgtgggggtggaggggggaggctGCCTGGGGAGAAGGGGGTCCGACAGGGTCTGGAGGTTTCTGGGCTGGGGGGCTCATGGAGGTCTGGGAAGGACAGCCAGCCGGCTGAGGCAGAGTACCTGAGCTCCAGGTGTGTCCTGTTCACCTATTTCCACGGCAACATCGAGGATGTGGTGGATGAGCATTTCTCCAGGGCTCTGAGCCAACCCAGCACCTTCACTGGAGAGACCAAGAGCTCCAGGTGCACACCCATTCACACCTCTGCCTCGGCTGGACTGTGGAAAGACAGTGTATCTCTCTCAGAAGGCCAGTGtagttctctgtcctcttctctgtGGGGTGGAGGTTACCAGTCCCAGACCAGCCCCTGTCTGCCCATCCACCCAGACTTCTCCCCCATCCCTGCAGGCTTCCATGCCCCAGACAGAGCTCTGTGGACAGGCCACGCTCTGCCCCAGCCCAGCCTCCCTCCTCCaacctctctccctgacccctggGCCTACAACCTCAGCCCCCAGACCTCCGCCAGCTGCACACACGTCCACGACgtctacccacccacacaccctcacacacacatgcacccccGGCACACACACGCAGTACTACATCCCCACCCGTCCCATGACCCAGGCCTAAACCCCAGGTTCAGCCCTCTGCTCCTGACTGGTGTGAAGACTCAGATCCCCCTAGCCCACAGCCCTGCTGGACACagcacacacagtaacacacacagtaacacacacagcagCCAGAGCCCAGGGATACACAGTGGTGTGAAGACAGAGGTGGAGCAAGCCAAccccccaaccctgaccccctcaGCCTGGCCCACAGCTCTACACACACCCATGGATATCTACGACTCAGgtctggATCAGGACAAAGTGAAGGCTGTTTGGTTCTGAGAGAGAGGATATGACATCACGGTGACGTCACCCTGCCACTGAGCTGTGATCAGCTCTAACAGAACCTCCTGGAACCACATTGTTTTGTGGACTCGTTCTCTAGAAGACTCTCCACTCACTAGAAGAACTCAGAACTCCAGGGTGGTTTTAGGTTTCTCAGAAATCCTTCTGGAGAAATATAGACTACTCTCCATGCCTCACAATCCACCAGGGATACTTCAGATCACACTTTGGCAAAATATTTGTTCCTAATTTGTACCAAAAGTATTAGCCGGTTGATTGGGAACTAGTATCCCACATGAGGGTTCTGTTTAAAGAACGTAGTTTGTGGGAACACCACTCAGCCAAGCCTCTTTCTGATCTTTTAATATTGTGTTATGTGTGTAACTAGCTATATGTGTGTAATTGACTGAAATATATTTGGTATATACAGTAGTACTGTGATCTGAAGTGATTATCATTTCCGTAAAGTGTTTGATTGTTGCTAATTGTTTTTCACCAaccctgtgttgtcatgttgcctAGTGTTCTGTATGTGTGGAGAAATGTCATTATTGATGTGTAATAAATTGCTAAGTTCTATTGGCAATCATGCCCTACATCTTTAAGAGCTGACTCAAAGTACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322487 lncRNA upstream 27162 63096986 ~ 63097218 (+) True G284366
TU322476 lncRNA upstream 48216 63075748 ~ 63076164 (+) True G284355
TU322467 lncRNA upstream 56910 63067225 ~ 63067470 (+) True G284346
TU322466 lncRNA upstream 57226 63066949 ~ 63067154 (+) True G284345
TU322403 lncRNA upstream 103667 62971484 ~ 63020713 (+) True G284291
TU322604 lncRNA downstream 1162 63130177 ~ 63130380 (+) True G284471
TU322606 lncRNA downstream 3258 63132273 ~ 63132581 (+) True G284473
TU322681 lncRNA downstream 128348 63257363 ~ 63257713 (+) True G284535
TU322685 lncRNA downstream 138104 63267119 ~ 63277329 (+) True G284537
TU322710 lncRNA downstream 183783 63312798 ~ 63313826 (+) True G284560
XR_002472972.2 mRNA upstream 4973 63113667 ~ 63119407 (+) True LOC110520363
XM_036974891.1 mRNA upstream 116461 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA upstream 116461 62947318 ~ 63007919 (+) True LOC110520359
XR_005051352.1 mRNA upstream 263882 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 311299 62783246 ~ 62813081 (+) False LOC110520355
XM_021597627.2 mRNA downstream 44221 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA downstream 44228 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA downstream 44228 63173243 ~ 63204595 (+) False LOC110520366
XM_021597629.2 mRNA downstream 44228 63173243 ~ 63204595 (+) True LOC110520366
XM_021597631.2 mRNA downstream 96238 63225253 ~ 63234657 (+) False LOC110520367
TU322433 other upstream 101789 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 417410 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 715523 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 927429 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 1162905 61957388 ~ 61961475 (+) True G282707
TU322683 other downstream 138104 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 261916 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 577553 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 613991 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 613991 63743006 ~ 63745493 (+) True G285001

Expression Profile