RNA id: TU322474


Basic Information

Item Value
RNA id TU322474
length 1354
RNA type TUCP
GC content 0.52
exon number 4
gene id LOC110520364
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63124380 ~ 63129015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGTTTCTGGGCTGGGGGGCTCATGGAGGTCTGGGAAGGACAGCCAGCCGGCTGAGGCAGAGTACCTGAGCTCCAGGTGTGTCCTGTTCACCTATTTCCACGGCAACATCGAGGATGTGGTGGATGAGCATTTCTCCAGGGCTCTGAGCCAACCCAGCACCTTCACTGGAGAGACCAAGAGCTCCAGACAGTGTATCTCTCTCAGAAGGCCAGTGtagttctctgtcctcttctctgtGGGGTGGAGGTTACCAGTCCCAGACCAGCCCCTGTCTGCCCATCCACCCAGACTTCTCCCCCATCCCTGCAGGCTTCCATGCCCCAGACAGAGCTCTGTGGACAGGCCACGCTCTGCCCCAGCCCAGCCTCCCTCCTCCaacctctctccctgacccctggGCCTACAACCTCAGCCCCCAGACCTCCGCCAGCTGCACACACGTCCACGACgtctacccacccacacaccctcacacacacatgcacccccGGCACACACACGCAGTACTACATCCCCACCCGTCCCATGACCCAGGCCTAAACCCCAGGTTCAGCCCTCTGCTCCTGACTGGTGTGAAGACTCAGATCCCCCTAGCCCACAGCCCTGCTGGACACagcacacacagtaacacacacagtaacacacacagcagCCAGAGCCCAGGGATACACAGTGGTGTGAAGACAGAGGTGGAGCAAGCCAAccccccaaccctgaccccctcaGCCTGGCCCACAGCTCTACACACACCCATGGATATCTACGACTCAGgtctggATCAGGACAAAGTGAAGGCTGTTTGGTTCTGAGAGAGAGGATATGACATCACGGTGACGTCACCCTGCCACTGAGCTGTGATCAGCTCTAACAGAACCTCCTGGAACCACATTGTTTTGTGGACTCGTTCTCTAGAAGACTCTCCACTCACTAGAAGAACTCAGAACTCCAGGGTGGTTTTAGGTTTCTCAGAAATCCTTCTGGAGAAATATAGACTACTCTCCATGCCTCACAATCCACCAGGGATACTTCAGATCACACTTTGGCAAAATATTTGTTCCTAATTTGTACCAAAAGTATTAGCCGGTTGATTGGGAACTAGTATCCCACATGAGGGTTCTGTTTAAAGAACGTAGTTTGTGGGAACACCACTCAGCCAAGCCTCTTTCTGATCTTTTAATATTGTGTTATGTGTGTAACTAGCTATATGTGTGTAATTGACTGAAATATATTTGGTATATACAGTAGTACTGTGTTTGATTGTTGCTAATTGTTTTTCACCAaccctgtgttgtcatgttgcctAGTGTTCTGTATGTGTGGAGAAATGTCATTATTGATGTGTAATAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322475 lncRNA upstream 75 63124808 ~ 63125815 (+) False LOC110520364
TU322487 lncRNA upstream 28672 63096986 ~ 63097218 (+) True G284366
TU322476 lncRNA upstream 49726 63075748 ~ 63076164 (+) True G284355
TU322467 lncRNA upstream 58420 63067225 ~ 63067470 (+) True G284346
TU322466 lncRNA upstream 58736 63066949 ~ 63067154 (+) True G284345
TU322604 lncRNA downstream 1219 63130177 ~ 63130380 (+) True G284471
TU322606 lncRNA downstream 3315 63132273 ~ 63132581 (+) True G284473
TU322681 lncRNA downstream 128405 63257363 ~ 63257713 (+) True G284535
TU322685 lncRNA downstream 138161 63267119 ~ 63277329 (+) True G284537
TU322710 lncRNA downstream 183840 63312798 ~ 63313826 (+) True G284560
XR_002472972.2 mRNA upstream 6483 63113667 ~ 63119407 (+) True LOC110520363
XM_036974891.1 mRNA upstream 117971 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA upstream 117971 62947318 ~ 63007919 (+) True LOC110520359
XR_005051352.1 mRNA upstream 265392 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 312809 62783246 ~ 62813081 (+) False LOC110520355
XM_021597627.2 mRNA downstream 44278 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA downstream 44285 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA downstream 44285 63173243 ~ 63204595 (+) False LOC110520366
XM_021597629.2 mRNA downstream 44285 63173243 ~ 63204595 (+) True LOC110520366
XM_021597631.2 mRNA downstream 96295 63225253 ~ 63234657 (+) False LOC110520367
TU322433 other upstream 103299 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 418920 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 717033 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 928939 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 1164415 61957388 ~ 61961475 (+) True G282707
TU322683 other downstream 138161 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 261973 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 577610 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 614048 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 614048 63743006 ~ 63745493 (+) True G285001

Expression Profile