RNA id: XM_021597628.2


Basic Information

Item Value
RNA id XM_021597628.2
length 8233
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110520366
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63173236 ~ 63204595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCGCTGAGGGTGATTACTACTGCCTGAATCAGTCTTGTTTTCATGGAATTAACTTTTGTTGGAACATCATCTCGCTTCAACACTTGCTACACGGTGGGAATAACAGGACTGGAGTGGGAGGTTGAATGACGATTTTGTGGTGAGTGGCTAGTCCGTCACGCTGAGCCTGCGTTGCCATGGACGCCTGTGCCCGTATCCGAGGAGTTCCTCTCAGGACCAGAGCTTCCAGGAAAGAGGCGGTGCGTGACGGCGGGACTCCGTGTATGAAGAGCCTTCTGAGCAGCAGAAAGGAGCTGTGCAGCGTGGGATTGGAGCTGCAGACCAGAGATACTCCATGCCTGACTGAGATCCATTTTGTGTGTTTGCCTGGTCATTCTGAAGGGGAGGATCTAACTCTACAGGCCCTTTCTTCTCTCCCGGGGGACCTGGCGGAGCTGCTGAGGTCTCTCCACGTCACCAGCCTGAGAAACGAAGAGGTGCTGCTACTGAAGGACAGCAGGAGATCAGCCGACAGGAGGGACTCTTCTACTCAGCAGTGCTGGCTGAAGGCGGTGTGTGTTCTGAGACCCAGCCCCAGCCAGGCCATTGTTGGTGTGTTGGTGGGCCTTCTGGGGCGTTACGCTGCGGGGGTCCGCTATGCCCTGGAGCTCCAGGCCCTCCACAAGGGCACGGCTGAGTCCTGCCAGCCCGAGGACGATAACACCAACCAGTCTGTGTCGTCCATCGAAGACGACTTTGTCACCGCTCTGGAACACCTGGAGGAAGACGACAACTCCAATGGCTCTTATCTCCATGGAAACCAGCGTGATGTGGCCTCCCAGACTGTCCCCGCCAACAAGAGAAACAAGGATCTATCAGGTTCCAGGATCATAATCAGCTCTGCCCCCAGGAAGTCCTTAACCAATCGCAGGTCTCCCCCAGAGGTGTCCATTACCGTACAGCACTCCAGAGGAGCAGAGTCCCAGTGGACCCTCTACAGCCCAAGAGCCCAGCTCCCCTCCCTCACGCGACCTGTCAGCGAATCAGAGGAATCGAATGGCTCAAGCCCTAGTCCAATCATCTTTCTAGATGAGGTTGGCTACCAGAAGAGTCTCAAAGCGACACTGGACATCCCTCAGATCCCTGGGGGACCAACGGACAGGGTGGAGGACTCTGACTCTGAGGTCAGCGAGTTCTTCGACAGCTTTGACCAGTTTGATGATCTAGATGAACTGAGCTCAGAGAGCTGTACACTCACTCTGCCTCTAGACCCGACATCTTGCATTTCTCCCACCGACCTAGACCAGAAGAAGAAGTACACTGAGGCTGGTACTGGCAAGTCGGGGTCCAAGAAAGTGTCCCGAAGCTGTTCCACTATGAACCCCCACCGGTTCGACCAGCGCACCCTACCGGCCAATGTGAAGAAACCCACCCCGCTCAGAAGCCCCCTTCCCCCTGGATCTCCCTTCGGATCCCCTGACTCCCCCCGGCCGGCCCGGACCTCTTGTGAGGAGAGTGGAGGTCTTCTCTTCAGCCCTGTCAGCTCTTCAGCCTTCAGCCCTTTGGGAGACGGAGGAGCTCTGGATTTCTTCTGGAAGACCGAGGGAGAGGTAGGAGATGTGTCAGAGCTACGGAAACCCCAGGACCTTTGTACCCTCTACAAAACCTACTCAGACTTTGCCAGCAGTTTGTCCAAGGAGATCCTGGGCTCCGTGTGTGGATACCAGTCTCCCGTGGACCTCAACGACAACAAGAACCTGAGCTGTGTCTGTCACAAGGAGTTCCAGAACCAGTCTGGGCACGTCATGAAGCTGTCTGAGATCCAGGAGACGGTGACTGTCTCCAAGCTGCAGCAGAAGCCCCAGTCTCTGAAGGACGGCATCCAGAGGTTCGCTACAGACTTGGTAGAGATGAGTCTGGGCAGCGCTCTGAGAGACCTGCAGAAGGGAATGTCCTCCTGCACCACCACGCTCTGCCACCTGGCCGCCAGACTCACCTCATCTGTCTTCCAGATGGCCTTCCAGGAGATCGGCATGCGCCACGCCTACGTCCTGAAGGAACGGGCCGTCAACGGACTGGCTGGGTTCCTGGTGGGAGAGGCGGTGTCAGGGGCTCTGAAAGACTTCCTGATGGTGAAGAAGCAGATGTTCAACAGCAAGGTGACGCAGTTTGCCGCTGACCTGGCAGAGGAGCTGGTGTTTGAGGGGATGATGGAAGTGTGTCAGttctcccatccctccacccccctcaccCCCAGCGATTGGTCCTTCGGGGTGGGGGAGGACGACGATGAGGAAGTGGTGTCTTCCTATGCCTCGGACCTCTCAGAGTCTGTCCTCCAGGAGGCCTTCATAGAACTGTCCCAGGCTGATGTTGCCTTCAGTACCCAGGCAGCCATCAGTGTCTCTGTGAACAACATCTGCTACGTCAGCACTGTCGACACACACACCACCTGCAGTACCGCCGCAGGCCACCAGGCTTTCTACGTTAACCCACCCGAGGAAGGCCCAGGTCCATCAGGCGAAGATGGCTGTACGGTGAAGAAGGCGCTGTTCTGTGTGTCTGGAATGGCCAGCTGTGTACCGGTCCCCCAGGCAGGCCAAGCCATCTCCCACCTCCACGACTCAGAGGAGCTCTGCCAGTGTAAGACCAGCCTGGCTCAGACCAGCCCCAAGAGGATCTGCAGCTCAGAGAACAGAGTGGTAACCACAACCTCCTCTGATGCTACTGCTGCCACACAAACTGACCTGCTGTCAAAGACCCACTTTCATAACTTCTCTGGCAACATGGTGGATATGATAGTGAGTGAAGCATGTGAACTGATGACTGCCACGAAGATGAAGAAGAAGGTGGAGGACTGTGCTGACTTCCTTTCTAAGACCATAGTGGGTCGGGGACCTCCATCCGGACAGGAGGGTAGTGTCACTGACCagacctccctctactctctccaccctccctttCAGACCCCAGGAGGAGTGAACTCTGAGTCAGGCTCCAAGACCAGCAGAGCAGTCGCTGAGACCCTGCCTGTGATGATGAACACTCTAGAGGTGCCAGGGTTGGAGATTGGAGGCTGGGTAGGCAGGAAGATGACCACCTGCGAGGAGATGGTTCCCAGTCCTGGTCACAAGCCCAACAGGACCCCTGGTACACCCCCCTCGACCCCCCAGCAGCCCAGCGAGGTGTCCCAGGAGAAACAGATCAAGCAGTTCTCCAAGAAGCTGAAAGAAAAGCTGGCCAAGGAGTTCTCCACCGCCACCCCTCCTCCCACCCCACACTACCAGCCAGGACCCGAGCCCAAAGAATCCACCTCTGAGACAGACAAGGCTGACTTCATGCTCAAACTGATGAGGTCTCTGTCTGAGGAGGCAGATGGGaacgagggggaggaggaggaagaagaagagggtgGAGTAGAAGGGGTTAACTCTGTAACTGAGACAGGAAGCCGTATGCAGCCAGAGCTCAACTTCTTGGATGGAGGACACAAGATGGCCGACAAGGGAGCCCTCCATTACGCAGAGCGCCTGGCGTGCCACATCGTCTCCATGGCGACAGAGATAGACACCCTGGGAGGAGTGGAGGATGGAGGTAGAAGGATGGTggagggcagggaggagaggagagacagcatgGCCCAGTTCTCAGCGCAGACCCTGAACACGCTGTGGATATACGCTGGCGAGGTGGCGGGAGAGGTGATCAGCGACGTGAAGAGGATAATGTGGTCAGGACAGTGTCGCCACAGTGCGCTCACACAAGGAAGCCAGGAGCAGTCGGGGGAATGCCCTCACCACCACCAACCCCAGCCTAGTGAACACAGCAGGGACTGCAGGGTGGGTCATCTGGCTGAACTGTGGTCCAGTGACCTCCTCTCGTCTGTCCTCCACCCATCCACCTCTACCCCCAGCTCTGGCCTATCCTCTGACTACCCCAGCTGTGAGAGTGTGACAGATGAGTACGCTGGCTACCTCATCAGGGTGctaaagaaagagggaggcagCAGGGAGCTGGTCCTGGATCAGTATGCCAGCCGTCTGGCCTACCGCTCCATCAAACTGGGCCTGGCCCATGCTGCCCGCAACATGAAGAAGAGACCCTCcaggcaccactcctccaggagGCTCCAGCAGAATGGCTGCAGGGGACCCAATGTCGAGCCATTCGTACCCAGGGACGAAGCAGGGAGAGtgggatctccttccagagatgTTGATGATGGGAGCCAGAGGGAGTACATGGAGCTGGTGAACTTCGCAGAGTCGTTGGCGTGCAACATCACCTGTGACGTCACACGCAAGCTCTGTGTGCCGTCGGTCCGACTACCCAAGTCCAGGACTGACTCGTGTCTGTATAAGAAGTCCAAGCTGGAGGACATGGCAGAGCGCCTGATCAGGAACTCCTTCTCATGCCCCCTGCTGTACAAGGAGGGGAATAGCAGGCAGTACCACAGCACAGGCAGCCTGTACGACGGTGGCTACAGCAGTGGAGTCATGGAGGTCCTGGAACACTATGCCAGGAACATAGTGGACGACACGTTGGAGATGGGCCTGGCCTCGACAGGAAGCCCAGCCCTGCAGGGTCCATACAGACACCACTCTGAGAGGCGAGCAGTGGGCTCTGCACTAGGGGAAACAACCTGCCGATACTGCCAGGTCAGGGAGTGTCTCTTCTGCTCACGGCCCAACAGGCAGCACCTCCTCGGGGGAGGAGCAGGCCAGAGGAGGAGGCTGGAAGGGGATGTGGGGGTGTGCGGCCTGGAGATCCCTGAGATCCACATCGATCTGGACCGCAGGGCTGTGTTCGCAGAGGAGATGGTCACTACGGCGATGGAGGGGGCCAAGCGCGAGCTGAGCAACACCAGCCTGAACGCCGACAGCGGGATCGGACACGACGGGTACAGCTTCGCCGAGAGCCTGACCGCCGAGATCATGACATCAGCACTATCCAACACACGCCAGACCACCAACCTCAGTTTCCCAGGCAGGGAGGCCACAGAGTCCTCTGTGTCCCAGCAGCTCAGTCTGAGTGTGGGAGATGACAGCTTGGGCAGCTGGTCCCGCCTCAGCTTCGAGGACGAACACCCTGACGAGACCAGCAGCTTCCTGCACCTCAGCGACAGCAATGGGAACAGCAGTAGTTGGAGCAGCCTGGGGTTAGAGGGAGAGGTGTATGAAGACCGcctgtccttctctccctctgacaGCGAAGGCACTGAGGACAAGGAGCTCGAGACCAAGGATGAATCATGCGgTTCAGTGCGTGTGGGCCAGGCTCCTGCTTACAGGCACCTCCTGGTGGTAAATTCTGAGCTCAGGGAGATGACTCCTGACCCACAGCACATGACCTTTGACCCCCAGCTCAGGAGCATGCTGCAGTGGGCGGCGGCCTCCATGGCTGACCTGCCCATGGTTCAGCTGAGTCCTAGTGGCAGCAGGGAGCTGCAGCAGCTGCCTGCGGTGGTCAAGAGGCTGAAGGAGAGGGAGTGGAAGGTGGGAGAGCTGCTCCAAGCCCTGCTGCGTTACTGTGAGGAGACccaaacacacaccccaccccagTCTGAACACGGAGAGGCGGGGAGAGCATCCCACCACACTCCCCTCTTCCAGTGGATCCTGGAGCACGCTTAGGCTCACTGCACCtctcctacctcccctccctccttacctcgCCCCAACACtacttactgtacagtatatctgtGAAGCCTGCTACATAGTGAGCACTACCTGTTAAACTAATGAACCCTATGAAGATTCCCATCACTTCTCAGTGATGTGCAGCGTACCTGCCAAACCCCGAACCCCCATTCTAGCCGCCTCATATCGTGGATCCTGTCCCTTATAGGGCTGTACCCCCATCGTTACCCAGAGGGCGCTATTAAAAACAGCAATTCTTATTATTTTGTGCATATGTGGGCATATTGCATACCGTAACTGAAAGCAATTGTGtattttcttctctcttctctggtTTTGTTGTGGTTGTTTTTAAAGGGATTCTTCTGGATTGTGTATTCCCTCAGTCAGATGAACACCCGGATAGCGTTGGCGCAATGACTGGGagtctatggtatctactagcatgccaGCAGTTACCCATAGACATCCACTCATTgcactaacactagttagcatctttcaaactgcacgcagaggcATATCTGGTATCCATTGGTTTATTTGActcttcattgccaaaatcccaaagtatccctttaatattGGTCTGTATATCACAGGTTGATTAGTCTGCTGTCGTTGACGACTGGCTTTGTTAAAGCGTTCCTACCCTGGTGCTACAGAGTAACTTTAACCTTCTGTTACAGGGGAGGGCGAGAGAGTAACTTTAACCTCTGTTACAGGGGAGGGCGAGAGAGTAACCTTAACCTCTGTTACAGACAGTAACCTTCTGTTACAGGGGAGGGCGAGAGAGTAACTTTAACCTCTGTTACAGACAGTAACCTTCCGTAACCTTCTGttagggggagagcgagagagtaacCTTAACCTCTGTTacagggggagagcgagagagtaacCTTAACCTCTGTTacagggggagagcgagagagtaacCTTAACCTCTGTTACACAGAGAAAGGGGAACATGACAGATGTACGGACCTGAACCATGTTAGATCGAGAGCTCGGGGTAGAGAAATgtcagtgaaagggagaggagggagaaagagatgaatGTGTTTTCTGTTAGGGAATCCCCATAGCTGCAGGCCAGATGATGTCATCACCTTAGCTCTCCTCTGTGGTGGTGTTTCCACATGATTAGGGACCAACGACACTCACATGTTGATTTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCCCCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGGGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAATTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTTAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTTCACCATGAGTAGAACTGAGTTTAAGATCACATGTTGATTTGAACCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322606 lncRNA upstream 40662 63132273 ~ 63132581 (+) True G284473
TU322604 lncRNA upstream 42863 63130177 ~ 63130380 (+) True G284471
TU322475 lncRNA upstream 47428 63124808 ~ 63125815 (+) False LOC110520364
TU322487 lncRNA upstream 76025 63096986 ~ 63097218 (+) True G284366
TU322476 lncRNA upstream 97079 63075748 ~ 63076164 (+) True G284355
TU322681 lncRNA downstream 52768 63257363 ~ 63257713 (+) True G284535
TU322685 lncRNA downstream 62524 63267119 ~ 63277329 (+) True G284537
TU322710 lncRNA downstream 108203 63312798 ~ 63313826 (+) True G284560
TU322714 lncRNA downstream 113843 63318438 ~ 63320782 (+) False G284561
TU322712 lncRNA downstream 114236 63318831 ~ 63320782 (+) False G284561
XM_021597625.2 mRNA upstream 44228 63124380 ~ 63129015 (+) False LOC110520364
XR_002472972.2 mRNA upstream 53836 63113667 ~ 63119407 (+) True LOC110520363
XM_036974891.1 mRNA upstream 165324 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA upstream 165324 62947318 ~ 63007919 (+) True LOC110520359
XR_005051352.1 mRNA upstream 312745 62858213 ~ 62860498 (+) True LOC118964307
XM_021597631.2 mRNA downstream 20658 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA downstream 20660 63225255 ~ 63234657 (+) True LOC110520367
XM_021597635.2 mRNA downstream 244765 63449360 ~ 63457571 (+) False lacc1
XM_021597636.2 mRNA downstream 315209 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA downstream 315229 63519824 ~ 63525770 (+) False serp2
TU322474 other upstream 44285 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 150652 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 466273 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 764386 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 976292 62193604 ~ 62196951 (+) True LOC110520339
TU322683 other downstream 62524 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 186336 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 501973 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 538411 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 538411 63743006 ~ 63745493 (+) True G285001

Expression Profile