RNA id: XM_021597631.2


Basic Information

Item Value
RNA id XM_021597631.2
length 2565
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110520367
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63225253 ~ 63234657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCGCGGGTCTTGacaggcagcacacacacacacacacgatactaGAGATCACTTTCGTCTGATTGGCTGTCTCTCTACAAAGGGAGCCGCTAGTCTTCTGCCCACCCACTGTTTATAGCTCTACTCGATCAGAATTTCCTTCCTTCCACTGAAAGTAGGCTATTCATCCAGAGCACCAGGTCTCACCATGGCAGCTAATGATTACCGAGGCTACCTGAGGAACCACTCCGACACGGAGAGCGCTCAGCCCCGCTACCACGCGTCCCATGGCTCGGAACCCACCTATAGACCGCTTATATTCGGAACTCTTGCTATTATGGGATTTCTGCAGATTGCATCGAGTGTGGCGATCTTGTTACACTTGACAGGTTATCTCCAAGAGGTAGACATCTCCTCTGCCCCACAGCAGCCAATAGAGGAAGTGCAGACAGAACCGATCATTGCCGATGCCCTGAGGGACCCGAGAAAAGGCAGACAACGCTGCAAAAACCAGGGGAGGGAGGGGCTTCCATCAGCTCATCTACCAATCAAAGTGACCATCGACTACGTGAAGAGTAAGCTCATAGAAGTAGCCAACAAGGGGGAGCTGAGAGCAGCTATGATCCATTGGGACGAGGCGCAGGGCCACCTGAAGAAGATGCGTTACCATGACGGCCGTCTCCTGGTGGACGAGTCAGGCCTGTACTACGTCTACGCCAAGACCTGTTTCCGCTACTACGACCTGGAACCTGAGATGGAGCCCAGCGACGCCCCTGGACAAGCCCTCGCCACACCCCAGACCGTGGACGTAAACAACGCCCAGCTCATCCAGTACATCTCCCAGGAGAAACACACGTCCTCGCCCAGCAAGTCTGTGGTGCTGATGAAGACAGGCAGCACCATGCGCTGGAATAACTCTCAGTATAACATGTACTGTGCCCAGCAGGGCAGGGGGGTGATGCTACAGCACGGGGACGGACTGTTTGTTAACGTGTCCAACGCCTGGATGCTGGACCCTGAACCGGAGGGGACGTACTTTGGGGCGATCAAAATGGGGAACTGAACCAACATACAGAAAAGGAGGATGTGCTACTAGACGTTCTGCAGGCGTAACTGCCAAAcaaccacagagagacagagcactTACTGCATGTGAGATTACTGAATTTGTAATTGATTTGTTTTTGTATTGAAAAGGTATGGGCTATGTTGCTCTTCACCAGATAGCCTTCTTACCCGATAGAGAATGATGATAGGCAGTTATTTAGATGAGGTGTTATGGATACCTCTGGTCACTCACTAGGCCTCAACAAAACACATAATACGCTGTGCACACATACTTTAGACAAGACAACCATTTTCCTTGTGGTCCAAAACGACACTGGATGCTTTTTTAGTAGACCTGTAACATTTTATACAGCTGATAGTTATCAACCACTTAAGATTGTTGATATTTGTAATTCCAGGGAGCGCTTTTGAAAATGTTTGTACAATGTTTTTTTTCAAGCATAGTAGTATGAATCCTATTGAAAATGTTTGTTTATCAGCTAACGACACAGTCGTTCCTCATCCCTAGCCTGGCCCCTCATAGTTTACTAAACATTGTCATCGTCTTGAACAGAAGCACAGCTGGGGTACTTTGTTTCTAACGGAGTAGAGTTTTCACCAATCatgctcctctgtctctcttgggAAAGGATGAAGTAGAGGTTAGAGGTTGAATAGGATGTGATTCAGTAGTGAACACAGTACCACTGTCTGTTCAGGCAACATTTAACATTACATAATGTGCTGTGTAAGAACAGTGATATaaaactgttcatttttgttttccAAGAAAATACTGAAAATGGAGTACAGAAGTGGTAGCTAATGGCTCCATCACTGCATTGACTTTGTTTATCCAGGAGAGACTTGGTGTCGTCCCTCATCCCAGGAACTGAGGGGAACATAGTTGTGGTTTGGatcaaatgtttgttttcttattttgatttgtttttcccCAAACTATAGTATTGAACTCTCCTTGCCCTGTCTTTGGTAGTTTATACGAGTAATGATAATCACAAACAAGTGATGTAATGACGCAAACTGAAGATAGCTGGCCTGTCTTACCGTAGGGGACGAGAGCAAAGATTGTCTTTATGAAACTAGCGGATCCAGATTGACTTTGGTCCACCTTTAATTTATAGTTTCTTTTTTCATTTTACTCTTCGTGAAGGTAAATGGGAATATGcactaaatgtatttatttgacaTAAAAATGCAGATATGTACCATTGGTTAAATGATCTGTCTGCTGTAAAAGCATGTATATTTGATGTCTGTATTACAGTAGGCCGTACTTAGTTTATCAGTAGATGCGCTTTTCTTGTTCAAACACAGGGGCTCAATGTTGAAAtctgtatttatgtattttttatttagacAATTCTGTGTGCACTTGCCTAGCCGAAGCAGAATATACTGTCCATCATAAGATTGTAGCAAACTTTTAAATCTTCatcttgtaaaaaaataaaaaaaataaaaagatgttTATTTATGTCAGTTTAACTAATAAAATCATTACTTTTCTATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322606 lncRNA upstream 92672 63132273 ~ 63132581 (+) True G284473
TU322604 lncRNA upstream 94873 63130177 ~ 63130380 (+) True G284471
TU322475 lncRNA upstream 99438 63124808 ~ 63125815 (+) False LOC110520364
TU322487 lncRNA upstream 128035 63096986 ~ 63097218 (+) True G284366
TU322476 lncRNA upstream 149089 63075748 ~ 63076164 (+) True G284355
TU322681 lncRNA downstream 22706 63257363 ~ 63257713 (+) True G284535
TU322685 lncRNA downstream 32462 63267119 ~ 63277329 (+) True G284537
TU322710 lncRNA downstream 78141 63312798 ~ 63313826 (+) True G284560
TU322714 lncRNA downstream 83781 63318438 ~ 63320782 (+) False G284561
TU322712 lncRNA downstream 84174 63318831 ~ 63320782 (+) False G284561
XM_021597627.2 mRNA upstream 20658 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA upstream 20658 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA upstream 20658 63173243 ~ 63204595 (+) False LOC110520366
XM_021597629.2 mRNA upstream 20658 63173243 ~ 63204595 (+) True LOC110520366
XM_021597625.2 mRNA upstream 96238 63124380 ~ 63129015 (+) False LOC110520364
XM_021597635.2 mRNA downstream 214703 63449360 ~ 63457571 (+) False lacc1
XM_021597636.2 mRNA downstream 285147 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA downstream 285167 63519824 ~ 63525770 (+) False serp2
XM_021597641.2 mRNA downstream 391183 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 391521 63626178 ~ 63682242 (+) True gtf2f2b
TU322474 other upstream 96295 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 202662 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 518283 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 816396 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 1028302 62193604 ~ 62196951 (+) True LOC110520339
TU322683 other downstream 32462 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 156274 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 471911 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 508349 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 508349 63743006 ~ 63745493 (+) True G285001

Expression Profile