RNA id: XM_036974888.1


Basic Information

Item Value
RNA id XM_036974888.1
length 3262
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110520368
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63319848 ~ 63436412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATACATACGTTATGCCTCATCTATCCGACTGACTTTGTTAAGCCAAGCGACCGCAGCTTTCCTTCCCCTTTTCTGTTTTCTGGCTATGAACCCATTTTCCGCAACTGAAAACGTCCTTGCTAGTTTCAGAGGCAGTCAACCCGCCTGTCGAGTCTTGCACAGCGAACCGTAGATGGCGCGCGCCCAACTCGGTGTTTTTATTCGGTGGACAGGAGGAAACAGGGGCTCGTAGGGTGTCCCCACCACTCCTCCGTGAGATGCGCCAGAGAGCtcgcgggaggagagagagagaagagggttgacAGTGGCGTCGCATCCGTCATTCTTCTCCAGAATCCCTGAAAACTTAAAACGAGGGGAGATGGGATCCTATCGATAACTGAGTACTTCAGCCCTCCATTCAACTGTtcttctcctcatccctccatcctgtcctgtcctggtccGGTGTGGTCCGGTGTGGTCCGGTGTGCAGCCTGAGGGAGCTGTGGTTCTGATGAGAGCTCTGGAAGGTAAAGCCAGAGAGAGGAGCACAGAGGACCTGGTATGACCAGCGCAGCAGATGGTGTAGGGAGCCTGGGGAGCCTGGGGAGCCTGGGGAGCCTGGGGGTGGAGCATCACCCCAGTGTCCATGACCACGTGGTGAACGACCACGGAGCCTGGGCCACCGCCATGAACAACCTGGGCATCGTACCCATGGGTCTCAGAGGGCAGCAACTGGTCTCAGattcTCTCTGTATCCAGGGCTTTGACCCAGGTTTGAGTCTCCTAGCTCCCATCAACCCCATGATTGCAGGTATCAGCCTggtccctcctcctcctggtccCCCTGAGATGCCCATCATCAAGGAGATCATCCACTGTCAGAGCTGCACCCTGTTCCCTCAGAACCccaACCTGCCTCCTCCATCAACACGGGAGCGGCCACCAGGGTGTAAGACGGTGTTTGTGGGGGGTCTGCCGGAGAATGCCAGCGAGGAGATCATCAGGGAGGTGTTTGATCAGTGTGGTGAGATCATCGCTATCAGGAAGAGCAAGAAAAACTTCTGTCACATCCGCTTCAGTGAGGAGTTCATGGTGGATAagtccctctacctctctgGCTACCGGATGCGTATCGGCTCCAGTACAGATAAGAAGGACTCAGGGAGGATGCACGTGGACTTTGCTCAGGCCAGAGACGACCTGTATGAGTGGGAATGTCAACAGAGGCTGCTGGCCAGGGAGGAACGACACCGACGCAAGATCCACGAAGACTTCCTCCGTCCGCCCTCGCCACCTCCCATCATGCATTTCTCCGAGCATGAGGCGGGACAGCTGGCGGAGAGATTGAAAGATGACCATAAGTTCAGTGAGGCGACTGCAGTCCTGTTCACGTGGATCGACCGTGGTGAGGTCAACCGGCGGTCGGCCAATAACTTCTATTCTATGATCCAGTCGGCCAATAGCCACGTCCGGAGGCTGATGAGTGAGAAGGCCCAGcacgaggaggagatggagcTAGCCAAGGAGACATTTAAAAATGCCCTGCTGGCCATATTGACTCAGTTCGAGCAGATCACGGCTGTGTTCACCGCTGCCTCCAGGCAGAAGGCATGGGACCATTTCTCTAAAGCGCAGCGCAAGAACATAGACATTTGGAGAAAGCAGTGTGAGGAGCTGAGGAATGCCCACAGTGAGGAGATCATGGGGATTCGccgggaggaggagatggagatgtcTGACGACGACTCGGATGAGAGCCCCTGTAAGAAGATACGCATGGAGGAAAATGgtgtgTGTGGCCAGTCTGGGGCCTCTCTGAGGGAGGAGAATGACTCTCTGCGTTGGCAGCTGGACGCCTACAGGAATGAGGTGGAGCTGCTGAGGAAGGAGCAAGGCAAGGCTTGCCGCCCTGACGACCCTGAACACttccccgacacacacacacacctgctgcagCAGAGCATGCACAACAtgcaacagCAACTGCTGAGTCTGCAGGAGCAGCTGAGGAGTAAGGAGGTGGTGCTGGAGCAGGCTAGAGACGAGCACAGATACCTGCAGGGAGAAGTCCTAGCCCTGAGAGACAAGATGCTGACTAATGGGGATGTAGTGGAGGGGAACAACGGAGAAACACCTGAGAAGgtaGTGAACGGGTGTGTGACCACTCTGTACCGCAGCAGAGACCGGAGGAGTGAAGCAGCCATGAGAGGAGCCCTCACATCAGAAAGAGAGGCTCTGCTACTGGgcatCATATCTACCTTCCTCCATGTCCACCCGTTTGGAGCCAACATCGACTATCTGTGGTCCTACATCCAGAGACTGGACACTACGGTGTCAGCGGGGGAGTTGGAGTCTCTGATGGGTCGTCTGCCAAGTGTCTTCAGACAGGAGCTGAGTGGAGTGGGAGCCACGCTGGAGAAACGCTGGAACTTCTGTGGCTTCCAGAGCCTCAGCTCCGTGTGACACAGGGACCCACACACACTGTATggaacaggacacacacacatcggATGACCCAGGACACACACATGGCCTGAAAAACCATATGTGGGACAGAAACATACACACTTCCTGACCAGCCTCAAAACCTGGTGGACACATGAATAGAAGGCGTGTCAAATCCACAGACTGTtcgaacagtgtgtgtgtatgttgtgtatcCACAGACATCCACAGTGCATAGTGATAATACTCAAACAAAAACAGACACGGGACAAGAACAAAAGCTACAAGATCCCCTGATGGATCTTTCAGAGTTATATCTTTGCCAGGGATCTGCTGACACTGAGGCAGAGGAATCCATATGGATCTTTCAGAGTTATATCTTTGCCAGGGATCTGCTGACAGAGGCAGAGGAATCCATATGGATCTTTCAGAGTTATATCTTTGCCAGGGATCTGCTGACAGAGGCAGAGGAATCCATATGGATCTTTCAGAGTTATATCTTTGCAAGGGATCTGCTGACACTGAGGCAGAGGAATCCACATGGATCTCTACTTGATGCTGTATAACTAAATCCACTGATGTCAGCCAAAGTGGTCACAGAGCAGACCTTCTCTATGGTAACGTAGTGACCCGACCCCAGCCAACAGAACAGAAGGTTCTTAGTCCTAACGTCTCTCTCTAATGGACTGGAATGGTTTGAGatgcctctctctgttccctctctctgatttaagactctccctctctctgttccctctctctctctctctgtatcctctctctctctgttccctctctctctctgtatcctctctctctgtatcctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322849 lncRNA downstream 1786 63317266 ~ 63318062 (-) True G284689
TU322889 lncRNA downstream 47240 63270467 ~ 63272608 (-) True G284729
TU322892 lncRNA downstream 48072 63271494 ~ 63271776 (-) True G284731
TU322826 lncRNA downstream 157053 63162562 ~ 63162795 (-) True G284669
TU322823 lncRNA downstream 161138 63158416 ~ 63158710 (-) True G284666
TU323020 lncRNA upstream 57661 63494070 ~ 63494497 (-) True G284848
TU323027 lncRNA upstream 62862 63499271 ~ 63499570 (-) True G284855
TU323035 lncRNA upstream 71177 63507586 ~ 63507794 (-) True G284861
TU323484 lncRNA upstream 85318 63521727 ~ 63522017 (-) True G285277
TU323553 lncRNA upstream 211807 63648216 ~ 63660422 (-) True G285338
XM_036974894.1 mRNA downstream 36876 63267936 ~ 63282972 (-) True epsti1
XM_036974895.1 mRNA downstream 36877 63267118 ~ 63282971 (-) False epsti1
XM_036974897.1 mRNA downstream 36881 63267118 ~ 63282967 (-) False epsti1
XM_036974893.1 mRNA downstream 36886 63267118 ~ 63282962 (-) False epsti1
XM_036974896.1 mRNA downstream 38892 63267118 ~ 63280956 (-) False epsti1
XM_036974900.1 mRNA upstream 91434 63527843 ~ 63532315 (-) False LOC110520372
XM_036974901.1 mRNA upstream 91434 63527843 ~ 63547249 (-) False LOC110520372
XM_021597639.2 mRNA upstream 91434 63527843 ~ 63601105 (-) True LOC110520372
XM_021597642.2 mRNA upstream 212766 63649175 ~ 63650920 (-) True LOC110520374
XM_036974902.1 mRNA upstream 223287 63659696 ~ 63661441 (-) True LOC118964309
TU322065 other downstream 604671 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5730665 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5916273 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6022086 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7908361 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1533140 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1577850 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1618291 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1618291 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1798771 65235180 ~ 65235908 (-) True G286953

Expression Profile