RNA id: XM_021597635.2


Basic Information

Item Value
RNA id XM_021597635.2
length 3077
RNA type mRNA
GC content 0.43
exon number 5
gene id lacc1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63414756 ~ 63457571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTATTCAAGGAGGAAGTTCAAACTCCCTGGAGTTTCTGAAAGCGGCGTGTTGACGCATGAAAATGTGTTCCTCTTTGAGTAAAAAGGCCCATCGCCTCTTTGAAATGCATCATTGATAACACACTTGTAGAGAAGCTTTTAACTATTAGTTAAGTTATTTCCGTTTATTGGATATCATTATTGCATTTACTTGACAACATGTCAGAAGTCTTCATTATAGATCTAATTCACTGTCGGTGTCCACAGCACAGCTCGTGCGTGGAGAGGCAAGTAAAAAGCGTCACAGGTAGGAGCGATGTCGGCTTTCAGATATATCTACTATTCGGACCACACGGTCAACGTTGTAATGCAAACGGCGAGAACAAGATGTATTTGCTGGAAACGTTTTTCAGTCAGAAGACAAACGTCCACGTATTGGACTACACCACTGTTACGGAGTCTTGGTACCGTTTCAAACTAGCCGTGGACCAACTGGACTTACGAACGGTTCGGGTCTTCACCTCAAAAAAAAGGAGACCGATGTTTGAAGCATACATTGAGCAACTTTTCACGGAGGTGTATACATTTGAGTACATCACATCCAATGACCTCCCGTGCCCTGGTCATGTGCAATGCGACTCACCTTTAGCTCCACCTGTCAGTGAGGTCAGAGAGGAGGTCAGAAGCTTTCTGCAGCAGTTACCAGCTAAAGGAGACGTCACCATACTGAGGTCCACTTTCATTTCAGactgTTTCTCCCATGGATTCACCACACGTACAGGAGGTATTTCCTccatctccaccctctcctctctcaacctGTTCAGTAGCTCCAGACGCAGAGACCCCATGACCCTCGTAGCCGAGAACATCCGCCGACTAGCCCAGAAGGCTGGGTTCTACCCCCGACGCCTGCACCTGGTCAAGGTGAACCACAGCAGTGACGTATGGGTGATGGGAAAGGAAGATGAGCCACACGACTATGATGGCATCGTAACCAATCAGAGAGGTGTTGTCATAGCTGCGCCAGGAGCTGATTGCATGCCCCTCCTCTTCACTGACCCCGTGGCCAGGGTCATCGGAGTAGCTCAcgctgGATGGAAAGGAACCCTGATGGGTGTTGCCATGGCTACAGTCAACGCCATGGTGATGGGATTCGGCAGCAGGGCGTGTGACGTCACCGTGGTGATCGGGCCGTCGGTGGGGGCCTGTTGTTTTACACTGGAGAGAGAGCAGGCTGCAGACTTCTACTCTATCCACCCTGACTGTGTTCCTGACATGGCTGAGACCAGGCCTCATGTCAACATACGACTAGCCACCAGAATACTTCTCCAGAGGGAAGGGGTTCTGCCTGAGCGTATCCATGACGACACGGTGACTGACAGGCCGAGCGTGACCCTGTGCACATCCTGTCACCCTGAGGCCTTCTTCTCCCACGTCAGGGACGGGCTTAACTTCGGAACGCAGATTGGCTTCCTGTGGATGGACGAAACAGGAACTACTGACTGTTTCAGTAGTTCAGAACACTGAATTaatttatgtacagtaccagtcaaaaggtttagaacacctactcattccagggtttttctttattttgactattttctacattgtagaataaaagtgaagacatcaaacctatgaaatcacacatatgaaatcatgtagtaatcaaaaaagtgtttaatatatttatatttgagattcttcaatgtagggaccctttggcttgatgacagctttacacactcttggcattctgtcaaccagcttcatgaggaatgatagtcccactaagcgcaaaccatatGGGATGGAGTATCTCTGCGCCACtcgaatgctatggtagccatgctggttaagtgtgccttaaattctaaataaatcactgacagtgtcacgatcaaagcaccccacaccatcccaCATCCTCGTCcatacttcacggtgggaaagacacatgcagagatcatccgttcacctactctgcgtctcacaaagacacaatggtttaactttaaaagttcttgaaattttccacattgactgacttTGATGTCTTAAAGTCATTATGGATTGTAttttctgtttgcttatttgagctgttcttgacataatatagacttggtcttttaccaaatactgTCTGCTatataccaccctaccttgtcacaacacaactgattggctcaaacgtattaagaaggaaagaaattccacaaatgaacaggtatacctgttaattgaaatgcattccaggtgactacctcatgaagacggttgagagaatgccaagtgtgattaaagctgtcgtcaaggcaaagggtggctactgtgaagaatcttacataaaacatattttgatttgtttaatacttttttggttactacatgattccatatgtgttatgatgttttgatgttttcatagttttgatgtcttcactgttattctacaatgtagaaaatagtccaaataaagaaaaaccctggaatgagtaggtgtgtccaaacatttgactggtactgtatattaaatgCACATCTAGCCATATCTGTCTGTGGTAAAGTTGCATGCAACATAAAAGCGGTACACTCCAGATATGATTAATCTTCCCATGAATATTCACTTCATATGCAAACACTTATTCATACACAATGCAttattgtgtttgtgtgaggATACAGAATTATTTTGGTGCCATTATTTTGGTTCCACAGAAATACAGTAGCAGGAGATCTGATATATCAAAAGGTGGCGATAGCGCCACCAAAATAATACTGTATCCTCACACAAATACGATAATGCATTGTTTGTTTATCTTTGTCTCAATCTCTTTATTTGAAAGATCTCAGGAATCACATCTGTATGAATAGGCCATGTGGGGTGCACATAAATGAAAACCCAATATAGAAAGTTATATTAAAAGAACCTCCATAGCAAGGCATATAAAGTATCTCTATCTTGTATGATCTTGTATTTTAGTGTTTTATGAGGCCATGGTCTATTAAAGCTACTGTTAAACACATCTTCACTGCATTGTATAAGTTCCACACCAGCTACTTTAATTAAACCTGACTAATTAAGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322755 lncRNA upstream 57643 63391453 ~ 63391717 (+) True G284600
TU322750 lncRNA upstream 62410 63386442 ~ 63386950 (+) True G284595
TU322746 lncRNA upstream 68997 63380128 ~ 63380363 (+) True G284591
TU322737 lncRNA upstream 86988 63361887 ~ 63362372 (+) True G284582
TU322729 lncRNA upstream 96849 63348668 ~ 63352511 (+) True G284575
TU322802 lncRNA downstream 12785 63470356 ~ 63470637 (+) True G284646
TU323030 lncRNA downstream 43603 63501174 ~ 63501407 (+) True G284858
TU323048 lncRNA downstream 62215 63519786 ~ 63525715 (+) True serp2
TU323149 lncRNA downstream 191367 63648938 ~ 63661435 (+) True G284968
TU323156 lncRNA downstream 217660 63675231 ~ 63720212 (+) True G284975
XM_021597631.2 mRNA upstream 214703 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 214703 63225255 ~ 63234657 (+) True LOC110520367
XM_021597627.2 mRNA upstream 244765 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA upstream 244765 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA upstream 244765 63173243 ~ 63204595 (+) False LOC110520366
XM_021597636.2 mRNA downstream 62233 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA downstream 62253 63519824 ~ 63525770 (+) False serp2
XM_021597641.2 mRNA downstream 168269 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 168607 63626178 ~ 63682242 (+) True gtf2f2b
XR_005039920.1 mRNA downstream 430687 63888258 ~ 63889211 (+) True LOC118944562
TU322754 other upstream 58076 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 136966 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 320402 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 426769 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 742390 62706331 ~ 62706970 (+) True LOC110504398
TU323169 other downstream 248997 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 285435 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 285435 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 613861 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 848941 64306512 ~ 64307360 (+) True G285763

Expression Profile