RNA id: XM_021597636.2


Basic Information

Item Value
RNA id XM_021597636.2
length 1422
RNA type mRNA
GC content 0.48
exon number 3
gene id serp2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63519786 ~ 63525770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCTTCATCATCCCTGCATCGAAATTACGCCGGCATATAACAATTTTACATCAATATAACATTCTCAGAAAATGGTAGCAAAACAAAGGATCCGTATGGCAAATGAAAAGCACAGCAAAAACATCACGCAGAGAGGCAACGTTGCAAAGACCCTGCGACCTCAGGAAGAGAAGTACCCCGTGGGGCCGTGGCTCCTGGCTCTGTTCGTCttcgtcgtctgtggatctgATCATCCAGAGCATCAGGATGGGAATGTGATCCAGAGGTCCCAcagactctcccctctctccccacacccGCTCATCAGACCTGAGGCTGCTCGCCACCCTACGTACCTCCCTAACACCTCCAGGAGGCCTGGAGGTCCGGACAGCTCTGTGTCCATCAGGGAAGGCCTGAGAGATGAGTGGACCACCCCCCTTCCCCCCTCGATTTTTCTCAATCACATGTTTACAGAGTTCCAGGCTGTGGAGATGAGAGCTTTTCTACTGACAGTCTAAACCACAACCAATGGCTGGCTCAATCTCGTACAGAGTGTTTTACACCTGCTcatatgtgtgagtgtgagactgtgagtgaatgtgtatgtgtgtgcagtcACTGATGTGACTGGCTGCTGTGCAATACTGCTGTGTTTCTATATACACtcaccggacagtttattaggtacaccaccttGTTCACAAAAATGATTCGCTCCTACTGACAGTGaccatggcttgctatataaagcaggcagacaggaatctagacattcagttactgttcaattgaacgttagaatgAGCAAAACAATTGACCTAAGTGACTTTAAGCGAGGTATGATTGTCGGTGCCAGGCGCGCCGGATCCAGTATTTCAAATGGCCGCCCTCCTGGGCTTTCATgcatgacagtgtctagggtttaccgagaatggtgcgacaaacaagaAACATTCAGTCAGTGCTGGTGAAAACAGCTAGCTGATGAGGGAGGCTGTAGGAGAATGGCAcaaattgtgcaagctaacaggcaggccacaaacagacaaataatggcACAGTataacagtggtgtgcagaacggcatcacGGAAGACACAACTCGtcgatccttgtcacggatgggctattgcagcagacgaccaaactgggttccactcctatcagctaaaaacattAAGAAACGTCTCCAGTGGAcatgcgatcaccaacactgaacaattgaggagtggaaaaacattgtctGGAACATGACAGTGAGTTCAGTTTACTTGATTGGCCTGCgcagtccccagacctcaacccaataagAGCATCTTTGGATAAGATGGAACGGGGTTCCGATCCAGTACTAGATGGAAGTACTTAATAAACAGGCCGGTGAGTGTATATCTGTGTTGTGTGAGAACCTTTTTCAAATAAATGTGACTCATTTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323030 lncRNA upstream 18397 63501174 ~ 63501407 (+) True G284858
TU322802 lncRNA upstream 49167 63470356 ~ 63470637 (+) True G284646
TU322771 lncRNA upstream 62251 63414756 ~ 63457553 (+) True lacc1
TU322755 lncRNA upstream 128087 63391453 ~ 63391717 (+) True G284600
TU322750 lncRNA upstream 132854 63386442 ~ 63386950 (+) True G284595
TU323149 lncRNA downstream 123168 63648938 ~ 63661435 (+) True G284968
TU323156 lncRNA downstream 149461 63675231 ~ 63720212 (+) True G284975
TU323170 lncRNA downstream 180798 63706568 ~ 63722064 (+) False G284986
TU323171 lncRNA downstream 180798 63706568 ~ 63722064 (+) True G284986
TU323144 lncRNA downstream 203940 63729710 ~ 63734409 (+) True G284963
XM_021597635.2 mRNA upstream 62233 63449360 ~ 63457571 (+) False lacc1
XM_021597631.2 mRNA upstream 285147 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 285147 63225255 ~ 63234657 (+) True LOC110520367
XM_021597626.2 mRNA upstream 315209 63173243 ~ 63204595 (+) False LOC110520366
XM_021597641.2 mRNA downstream 100070 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 100408 63626178 ~ 63682242 (+) True gtf2f2b
XR_005039920.1 mRNA downstream 362488 63888258 ~ 63889211 (+) True LOC118944562
XM_021583204.2 mRNA downstream 368895 63894665 ~ 63900193 (+) True LOC110504443
XM_021597663.2 mRNA downstream 446909 63972679 ~ 63974476 (+) True LOC110520383
TU322754 other upstream 128520 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 207410 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 390846 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 497213 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 812834 62706331 ~ 62706970 (+) True LOC110504398
TU323169 other downstream 180798 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 217236 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 217236 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 545662 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 780742 64306512 ~ 64307360 (+) True G285763

Expression Profile