RNA id: TU323048


Basic Information

Item Value
RNA id TU323048
length 1396
lncRNA type sense_over
GC content 0.49
exon number 3
gene id serp2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63519786 ~ 63525770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCAGTGGGGGTCTCGCGGCTTCATCATCCCTGCATCGAAATTACGCCGGCATATAACAATTTTACATCAATATAACATTCTCAGAAAATGGTAGCAAAACAAAGGATCCGTATGGCAAATGAAAAGCACAGCAAAAACATCACGCAGAGAGGCAACGTTGCAAAGACCCTGCGACCTCAGGAAGAGAAGTACCCCGTGGGGCCGTGGCTCCTGGCTCTGTTCGTCttcgtcgtctgtggatctgCAATCTTTCAGATCATCCAGAGCATCAGGATGGGAATGTGATCCAGAGGTCCCAcagactctcccctctctccccacacccGCTCATCAGACCTGAGGCTGCTCGCCACCCTACGTACCTCCCTAACACCTCCAGGAGGCCTGGAGGTCCGGACAGCTCTGTGTCCATCAGGGAAGGCCTGAGAGATGAGTGGACCACCCCCCTTCCCCCCTCGATTTTTCTCAATCACATGTTTACAGAGTTCCAGGCTGTGGAGATGAGAGCTTTTCTACTGACAGTCTAAACCACAACCAATGGCTGGCTCAATCTCGTACAGAGTGTTTTACACCTGCTcatatgtgtgagtgtgagactgtgagtgaatgtgtatgtgtgtgcagtcACTGATGTGACTGGCTGCTGTGCAATACTGCTGTGTTTCTATATACACtcaccggacagtttattaggtacaccaccttGTTCACAAAAATGATTCGCTCCTACTGACAGTGaccatggcttgctatataaagcaggcagacaggaatctagacattcagttactgttcaattgaacgttagaatgAGCAAAACAATTGACCTAAGTGACTTTAAGCGAGGTATGATTGTCGGTGCCAGGCGCGCCGGATCCAGTATTTCAAATGGCCGCCCTCCTGGGCTTTCATgcatgacagtgtctagggtttaccgagaatggtgcgacaaacaagaAACATTCAGTCAGTGCTGGTGAAAACAGCTAGCTGATGAGGGAGGCTGTAGGAGAATGGCAcaaattgtgcaagctaacaggcaggccacaaacagacaaataatggcACAGTataacagtggtgtgcagaacggcatcacGGAAGACACAACTCGtcgatccttgtcacggatgggctattgcagcagacgaccaaactgggttccactcctatcagctaaaaacattAAGAAACGTCTCCAGTGGAcatgcgatcaccaacactgaacaattgaggagtggaaaaacattgtctGGAACATGACAGTGAGTTCAGTTTACTTGATTGGCCTGCgcagtccccagacctcaacccaataagAGCATCTTTGGATAAGATGGAACGGGGTTCCGATCCAGTACTAGATGGAAGTACTTAATAAACAGGCCGGTGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323030 lncRNA upstream 18379 63501174 ~ 63501407 (+) True G284858
TU322802 lncRNA upstream 49149 63470356 ~ 63470637 (+) True G284646
TU322771 lncRNA upstream 62233 63414756 ~ 63457553 (+) True lacc1
TU322755 lncRNA upstream 128069 63391453 ~ 63391717 (+) True G284600
TU322750 lncRNA upstream 132836 63386442 ~ 63386950 (+) True G284595
TU323149 lncRNA downstream 123223 63648938 ~ 63661435 (+) True G284968
TU323156 lncRNA downstream 149516 63675231 ~ 63720212 (+) True G284975
TU323170 lncRNA downstream 180853 63706568 ~ 63722064 (+) False G284986
TU323171 lncRNA downstream 180853 63706568 ~ 63722064 (+) True G284986
TU323144 lncRNA downstream 203995 63729710 ~ 63734409 (+) True G284963
XM_021597635.2 mRNA upstream 62215 63449360 ~ 63457571 (+) False lacc1
XM_021597631.2 mRNA upstream 285129 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 285129 63225255 ~ 63234657 (+) True LOC110520367
XM_021597628.2 mRNA upstream 315191 63173243 ~ 63204595 (+) False LOC110520366
XM_021597641.2 mRNA downstream 100125 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 100463 63626178 ~ 63682242 (+) True gtf2f2b
XR_005039920.1 mRNA downstream 362543 63888258 ~ 63889211 (+) True LOC118944562
XM_021583204.2 mRNA downstream 368950 63894665 ~ 63900193 (+) True LOC110504443
XM_021597663.2 mRNA downstream 446964 63972679 ~ 63974476 (+) True LOC110520383
TU322754 other upstream 128502 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 207392 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 390828 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 497195 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 812816 62706331 ~ 62706970 (+) True LOC110504398
TU323169 other downstream 180853 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 217291 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 217291 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 545717 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 780797 64306512 ~ 64307360 (+) True G285763

Expression Profile