RNA id: XM_021597642.2


Basic Information

Item Value
RNA id XM_021597642.2
length 1746
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC110520374
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63649175 ~ 63650920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagcagactcattctgttaccaGTGCGCTCTGCACTCCTCTCTATGCCAGTACCTCTCCGTGACGCTCCCatacgctaacacacacacacacactttgttacTGCACGCTACACACTTatcctgaggacacacacacagacaaaaagaCTGTGCGGTTGTTGAGCGGGAGCGGCATGGAATGGAACCTCAGAAGGATGGACAGTGAACTGAGACAGATCAACACAGACCTGCTGCAGCCCAGCAAGAGCATCAAGAAGCCCTCCTCAGGCACCATCACTCTCAACGTGGGGGGCTTTCTCTATGCCGCACACCGCACCACCCTCAGCCGCCACCAGGGGTCAGTGTTGGAGGAGCTGGCCAGCGGCAGGAAGCCCATCCAGCACACTGACTCCATGGGCAACCCCTTCATCGACCGCGACGGCCCCGTGTTCAGACACATCCTCAACTTCCTGCGGACCGGAGACCTGCAGCTGCCCGACGACTTCCGAGAGGTGGGCCTTCTGAGAGGAGAAGCAGAGTTCTACCGCCTCAGCGGATTGGTGGAGGCTATTTCAGAGTGGGAGGGGATGCGGGCGGCGCAACGGGAGCCCGCCTTCCTGGAGGTGACTGACGAGAGGTCGCAGGGCTTCAAGGTGTACTGCAGCGACCCCTCCTTCATCGACAAGATCAAAGGGCGCCTGGTTCAGATCTCAAAGAGCCGACTGGACGGCTTCCCGGAGGAGTTTGAGGTGTCGTCCAACGTGATCCAGTTCCGCCACTTCATCAAGTCGGACCCTGGCTCCAGGCTGGTGCTgaaacaggacagtaccttcctGTGTACCCTGGAGTGTCTGAAGCTAGAGACGGTGATGCTGGCCCTGAAGGCTGGCTTCTCTCTAATCAGCTCTCTGGACAGCAGCAAGGGATCTGTGGTGGCCGCAGAGGCTCTGCACTTTGTCAAGtaagagagggtggggagaggcAGGGAAGAGGGAAAGATGGGGGAGCAGGATCAGGAAGGGAATGAACAGGGAGGTGGATAGAGGGGaagactgggagagaggggggcaggtaCAGTAGGTAGTGAGGGAAACAAGAGGGAGACGAAGGgatgagggaaggagaaaggTGTCTGATTCCAGATTGACACCTAGCCCCTAGATTGAAACTGACGCAGGACAGTCATTTCTGTGCACTTTGTCTGGAGTCCAACCTCAGAGTCAAGAGAGAGATCATCCACCCTCACTGCTGCAGGACAGAACACAACCTCTCAGAGGACCAGTCCCCTACTGAATTACGCATACATAAGCTGCTGTTTCCATCCAGGCTGCTTCCCCTTCAAACCAGCCTTAGTGCACCGTGAGGTATTACATTGTGTGTTTTCGGTTGCTGTGTTTTGAGTGGAGTTGTGTGACCAAGCCTTTCTCTGGATTCTgaggggagactggggagaggtACAGTTGAACACTATACCTCTGACTGACTGTTGCTGATCATTGGACAAAAAAACTATTGTTTAATTGCAGTAACTTGCCTGACTAGATGGAAGGGAGGTCAGTGTGAATGCCCTGCAGCAGAGAAGCACAGAGAGTTTAGACCCAAAGGTTCAAATCTAGCATGATGCATGTGCAGTGAAGATTTTCAAATCAGACACCAACATTGTGATTGTAAGTGCTGTGAGTGAGTATGTGACAATGTGTGTTATTTTGGAAATGTGAATGTTTTGTTTCACACAAAATAAAAGTCATGAATATCGGCATGATTA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323484 lncRNA downstream 127158 63521727 ~ 63522017 (-) True G285277
TU323035 lncRNA downstream 141381 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 149605 63499271 ~ 63499570 (-) True G284855
TU323020 lncRNA downstream 154678 63494070 ~ 63494497 (-) True G284848
TU322965 lncRNA downstream 191622 63414756 ~ 63457553 (-) True G284797
TU323638 lncRNA upstream 216263 63867183 ~ 63868625 (-) True LOC110520378
TU323688 lncRNA upstream 300537 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 301052 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 304490 63955410 ~ 63955880 (-) True G285445
TU323711 lncRNA upstream 341194 63992114 ~ 63992941 (-) False G285466
XM_021597639.2 mRNA downstream 48070 63527843 ~ 63601105 (-) True LOC110520372
XM_036974901.1 mRNA downstream 101926 63527843 ~ 63547249 (-) False LOC110520372
XM_036974900.1 mRNA downstream 116860 63527843 ~ 63532315 (-) False LOC110520372
XM_036974890.1 mRNA downstream 212763 63326306 ~ 63436412 (-) True LOC110520368
XM_036974888.1 mRNA downstream 212766 63319848 ~ 63436409 (-) False LOC110520368
XM_036974902.1 mRNA upstream 8776 63659696 ~ 63661441 (-) True LOC118964309
LOC110504432 mRNA upstream 31550 63682470 ~ 63688255 (-) True LOC110504432
LOC118964356 mRNA upstream 46093 63697013 ~ 63697211 (-) True LOC118964356
XM_036974903.1 mRNA upstream 55648 63706568 ~ 63710488 (-) True LOC118964310
LOC118964357 mRNA upstream 60519 63711439 ~ 63711637 (-) True LOC118964357
TU322065 other downstream 933998 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6059992 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6245600 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6351413 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8237688 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1318629 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1363339 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1403780 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1403780 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1584260 65235180 ~ 65235908 (-) True G286953

Expression Profile