RNA id: XM_036974911.1


Basic Information

Item Value
RNA id XM_036974911.1
length 3729
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110520376
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63742998 ~ 63779567 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgcgtgagagagttGAGGGAGGGTgaaagggaatgagagagagtgagcaagggagagaaaaagagggaggtagatcagggATCTGTGTGAAGTCAGGTcagtcagtctcagtctcagtgctGCTCAGACTCTCTGGATTAGTAATCCTGCCCTTTGGATTGGATTGTTCTGGGAGTGTTTGAGAAAGAGCCTGTATTTGAAGAATAGGCCTGGGGCAGGGTGTCTTGGACTGGGAGCGTGTACTAACTAGTATTTGGACTACCGAGTCGTGTCCTATGGAGGTTCAGGTCCAGAGTCGGCCACTGCCACCCACCATCCTGGAGAATGGGGCGGCCCCTGGCCCTGTACCCCACTCTGTTAACGGTCATCGTCATGCCAACAGTGGGGAGGCAGAGCTGCCTGTCTCCAAGTCTCAGAGGAGACGAAGCGATGTCAAAGTCTACAAGGAGTTCTGTGACTTCTACGCACGCTTCAACATGGCCAATGCCCTGGCCAATGCGATGTGTGAGCGCTGTAAGAGTGGCTTTGCCCCGGCGGAGAAGATCGTCAATAGCAACGGGGAGCTGTACCATGAGGGATGCTTCGTCTGTGCTCAGTGCTTCCAACAGTTCCCCGAAGGTCTCTTCTATGAGTTTGAGGGCAGGAAGTACTGTGAGCACGACTTCCAGATGTTGTTTGCTCCCTGCTGCCACCAATGTGgggAGTTTATCATTGGTCGTGTGATCAAGGCGATGAACAACAGTTGGCACCCTGACTGTTTCTGCTGTGACCTCTGCCAGGCCGTGCTGGCTGACGTGGGCTTCGTCAAGAACGCCGGCAGacacCTGTGTCGCCCGTGTCATAACCGTGAGAAGGCCCGTGGTCTGGGGAAGTACATCTGTCAGAAGTGCCACGCCATCATTGAGGAGCAGCCGCTGCTGTTCAAGAACGACCCCTACCACCCCGACCACTTCAACTGCAACAACTGCGGtaAGGAGCTGACTGCTGATGCCAGGGAGCTGAAGGGAGAGCTGTACTGCCTGCCCTGCCATGACAAGATGGGTGTTCCCATCTGTGGTGCTTGCAGGAGACCCATCGAGGGCCGCGTGGTCAATGCCATGGGCAAGCAGTGGCACGTCGAGcatTTTGTGTGTGCTAAGTGTGAGAAACCCTTCCTGGGCCATCGCCACTACGAACGCAAAGGACTGGCCTACTGTGAGACTCACTACAACCAGCTCTTTGGAGATGTCTGCTACCACTGCAACCGTGTCATTGAGGGTGATGTGGTGTCAGCCCTGAACAAGGCATGGTGTGTCAACTGCTTCGCCTGCTCCACCTGCAACACCAAGCTCACCCTAAAGAACAAGTTTGTGGAGTTTGACATGAAGCCGGTGTGTAAGAAGTGTTACGAGAAGTTTCCTCTGGAACTTAAGAAGAGGCTGAAGAAGCTGGCGGAGACGGTGGGCCGGAAGTAGACACAGACTGACCGAGAGAGACTGACCGAGAGAGACTGACCGAGAGAGACTGACCGAGAGAGACTGACCGAGAGAGACTGACCGAGAGAGACTGACCGAGAGAGGCTGACcgacagacccagacagactgacagacagacccagacagactgacagacagacccagacagacagacccagacaaactgacagacagacccagacagactgacagacagacccagacagactgacagacccagacagactgacagacagacccagacagactgacagacagacccagacagactgacagacagacccagacagactgacagacagacccagacagaccgGAAGCCTATAGTCACTAGATGGCCATGCTAGAATGGACAAAAGTGATATCATCAGAATGTTTGAGCAACCACATGAGCTATTTGTTCTTGGTGtaaggttagggattagggttatgTTGTTGATAAATTACATTTGCAGTTTCCTTCAATCTTTTCATGCTTGGCCAAATAGTGACAACCCATGAGCAGAGAGACCGACAGTACACAAAGAAGAGTCCTCGCCAAATCAGTGCCTTTGTCTAAAGACATATTCATATTATATTCATATTTATCCTTGATGCTAATATCATATATTTAATTGTTATTTTAGCTTAAAATGTCACTTCAAAACCCAACTTGTTTATTTAAGTATGCATCAGTGTCCTGGTATTTCATCATAAGAATGAAGAGTATTGATAAGGTTGTTACTGCCAGTGTGCTGGTCTGTTTCTGCCTTAGCCAACTACTTtatcattgtcatgccaaacagacagacacctgGGCTATGTTACTGATGCTACTCTCAATCACATTACTGTGCAGCAGAACTGGGTTGAGAGTACCAGAGTagagagtaccagtcaaaagtttggacacacctactcattccatggtttttctttatttttactattttctacattgtagaataatagtaaagacatcaactctgaaataacacatggaatcatgtagtaacccaaaaaagtgttaaacaaatgaaaatatattttatatttgagattcttcaaagtagccaccctttgccctgatggcagctttgcacactcttggcattctctcaaccagcttcatgaggaatgcttttccaactatCTTAAAGGAGTTGCATGGTAAATTGGAACGATTGGAATTGTGCCAAAAGTGCAAATTCTTGGCACCCTGCATACCGGTAAGCTAAATCAAGAACATGTCAAGTATTTTAAAGTATCTAATGTATGTACAGTGCTATTTGAGCCAGATCTGCTAGGCAGCTTCTTGAGCGAGAGAGTAGCCTCCATCCCAGCAGTTGAGGTCATATAGAGAAGTCAGATTCGTACCAGAGGTTTGTGTACATTTTTCAGGATGTATTGAAATATTATCCAAAGATAGTACTGAATAAGGTGACACGTGTATGCATATCTCATATAGAGCTTTTTGTGTGTCCACAACATTGTGTGTGGTGTTTATATTGTTCTATTCATATTATTTCACAATTGTTACATTTCCTTTGTGCTTTTATCACACAGACAGTAAAAATGTAAGACGTTATGTCACTGAAGGGTGTTTTGTAAACTTGGATAACagatgtttgtatgtttttgacAGTATTTTCAGAATAAACATAACCCACTTTTATCAACAGTAATGGAATCAAATAATATCTGGAAAATACTTTTCTCCATTCTTTACATGTCATGCATTACATTGTCTTTTAAAAGGGGGGATAAACATAACAGATACAAACAATTCCATTGATTTAGGATCTGCTTGTAACTGCAATGTTAATTTTTCCTTTTACTTTAGATGAAAGCGCATGTATGAGTACTGTaagatgtgtgaatgtgtgtttttcCTAGGTGTAAGCTCAGCTATCCTCTTATGGCAGTGTGACTTCTATCTAGATGCTCCATAGGAAGTAGAGATCTGCCGGTTAGAGAGAAGCATTCTATCCCTGTAGAAAACATGAATTTAGAGTTTTAGTTTTCCGCGGTGTTAAACTTTACTTGGAAGAAATGTGTTTGGCATAGAGTGATACAATTCCACATTCCACTGCTAAATGGGAATTTTAAAACCCTGTTTTTCCTCTGTCGTACTACAATATAATATGCTATGCTACATTCAAAGCCTTGATTAGTGTTCGCCTTATGCTTGTTACTTTAATTTTGGTTTGTTTCTAATGTCATCATATTCAACTTATTGACTTCtgaataataaaaaaatcctGCTACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323553 lncRNA downstream 82576 63648216 ~ 63660422 (-) True G285338
TU323484 lncRNA downstream 220981 63521727 ~ 63522017 (-) True G285277
TU323035 lncRNA downstream 235204 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 243428 63499271 ~ 63499570 (-) True G284855
TU323020 lncRNA downstream 248501 63494070 ~ 63494497 (-) True G284848
TU323638 lncRNA upstream 103737 63867183 ~ 63868625 (-) True LOC110520378
TU323688 lncRNA upstream 188011 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 188526 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 191964 63955410 ~ 63955880 (-) True G285445
TU323711 lncRNA upstream 228668 63992114 ~ 63992941 (-) False G285466
XM_021597643.2 mRNA downstream 388 63720994 ~ 63742610 (-) True LOC110520375
LOC118964357 mRNA downstream 31361 63711439 ~ 63711637 (-) True LOC118964357
XM_036974903.1 mRNA downstream 32510 63706568 ~ 63710488 (-) True LOC118964310
LOC118964356 mRNA downstream 45787 63697013 ~ 63697211 (-) True LOC118964356
LOC110504432 mRNA downstream 54743 63682470 ~ 63688255 (-) True LOC110504432
XM_021597654.2 mRNA upstream 17551 63780997 ~ 63822595 (-) False LOC110520377
XM_021597655.2 mRNA upstream 17551 63780997 ~ 63822595 (-) False LOC110520377
XM_036974904.1 mRNA upstream 17551 63780997 ~ 63822595 (-) True LOC110520377
XM_021597657.2 mRNA upstream 103715 63867161 ~ 63875731 (-) False LOC110520378
XM_021597658.2 mRNA upstream 103715 63867161 ~ 63875738 (-) False LOC110520378
TU322065 other downstream 1027821 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6153815 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6339423 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6445236 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8331511 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1206103 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1250813 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1291254 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1291254 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1471734 65235180 ~ 65235908 (-) True G286953

Expression Profile