RNA id: XM_036964575.1


Basic Information

Item Value
RNA id XM_036964575.1
length 1288
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110505395
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63901468 ~ 63904218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATCAAAGCTTATTTGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTAAAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGAGCAAATTGCACAATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323638 lncRNA downstream 32843 63867183 ~ 63868625 (-) True LOC110520378
TU323553 lncRNA downstream 241046 63648216 ~ 63660422 (-) True G285338
TU323484 lncRNA downstream 379451 63521727 ~ 63522017 (-) True G285277
TU323035 lncRNA downstream 393674 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 401898 63499271 ~ 63499570 (-) True G284855
TU323688 lncRNA upstream 47244 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 47759 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 51197 63955410 ~ 63955880 (-) True G285445
TU323711 lncRNA upstream 87901 63992114 ~ 63992941 (-) False G285466
TU323710 lncRNA upstream 88385 63992598 ~ 63992941 (-) True G285466
XM_021584574.2 mRNA downstream 14967 63881857 ~ 63886501 (-) True LOC110505387
XM_021597658.2 mRNA downstream 25730 63867161 ~ 63875738 (-) False LOC110520378
XM_021597657.2 mRNA downstream 25737 63867161 ~ 63875731 (-) False LOC110520378
XM_021597654.2 mRNA downstream 78873 63780997 ~ 63822595 (-) False LOC110520377
XM_036974914.1 mRNA upstream 7786 63911999 ~ 64174276 (-) True LOC110520380
XM_036974916.1 mRNA upstream 581576 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA upstream 581576 64485789 ~ 64641565 (-) False LOC110520379
XM_021597673.2 mRNA upstream 948290 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 957813 64862026 ~ 64883035 (-) False LOC110520386
TU322065 other downstream 1186291 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6312285 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6497893 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6603706 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8489981 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1065336 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1110046 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1150487 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1150487 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1330967 65235180 ~ 65235908 (-) True G286953

Expression Profile