RNA id: XM_021597671.2


Basic Information

Item Value
RNA id XM_021597671.2
length 3397
RNA type mRNA
GC content 0.47
exon number 11
gene id zgc:152951
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64854740 ~ 64861974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGTTATATTGATACACATATTTATAGGTTTCGGGTTCCCACACATATGTCCCTGTTACAGCGCTTGTTAGCGGAAAAATACGTTAGACAGTGGTTAGACTAGTtacatgtgctaattagctatctgcgtctccgaacacctgtgtgtaaccaAACCGTAGACGGACGCCAAAAACACGTTGACACTGAACAATACTCCCGGCTGCGACTGTATTAAAACAATGTACAATGGGGGAATCTGAGGGCAGGGTGCTGGGCAGGGTGACGGTGTACTCTGTGCTGGGCTGTCCCCACTGTGTGCAGGCTAAGACAAGCCTTGGCCGTCTGGGTCTGCCTGTGTGTGATGTAGACATGGGAAAGCACCCAGAGCTCCGGGACAGTGTGAAGGAGCTGACCGGACGGAGCACAGTTCCTCAGATCTTCTTCAACAGTGTCCACATCGGGGGGAATGATGACCTGCAGGAACTGCTTCCAGAGGAGTTGGAGCGTCTAGTGCGTTTGGTGAGGGAGGAGCCTGTCTTGTCAGAagccctgcccctgcccctggcCGAGGAGAACCAATCAGATGGCCCAGACACAGCTGAGGAGGCTGATGGAGAGTTTAAGTGTGAGAGGCATGCGTTAGCGGACGTGGTAGAGGATCTCAAGCAGAGCGATGTGATTGGATTTCagtggaggggactgagcatgtgCAGAAACAGCTTCACAGGAGCAcagctggttggctggctgcagAAAGAGAGGGGCATGGAGATGACTAAGGCATGTGAGACTGGGCAGATGTTACTGGACAGGAAGTACATGGTGGGCGTGGCTGGGgcagggaagggggaggggtttGGAGTGAGTGACAGGCTGTACAGGCTGATGGAACGCAACCCTCACTCGGCCCTGAACGCAGGACAGACTGCTGCATGCTCTCCTTTACAGGctgctGAGTTGTCTGCCATTCTAAGGAATATGATCCTGAAGTTGTTCTCTGAGTACCTCTCTTCTGATGGAAAGTGTGTGGACTACAAGGCCATGTCCCTGAGCCCAGTGTTTGAGCGCTACTGTGAGCTGGCTGTTCAGCTACAAAGAGTGGAGCTGCTGTCGCTGACCAGAGAGGAGAAACTAGCCTTCTTCATCAACATCTACAACGCTCTGGTCATTCACGGAAACGTCCGGATGGGAGCCCCAACCAACACGTGGCAGAGATACAAGTTCTTTAACTACGTGAGCTACCTGATTGGAGGAGAGGTGTTCACTCTGCAGGACATAGAGAACGGAGTTCTGAGAGGGAACAGAAAGGGCGTCGCACAGCTTCTCAAGCCCTTCTCTAAGACTGACCCTCGTCTACAGGTGGCTCTCCCAGACGCTGAGCCTCTCATCCATTTTGCGCTGAACTGTGGAGCTATGGGCTGTCCACCCATCAAAACATACACTCCACAGGACATCGATAGTCAGCTGCGCACGGCGGCCGAGTCCTTCCTGGAGAAcgatgatggctgtgtggtggaTTCTGAGAAGGGCGAGGTCCGTCTCAGCCAAATATTTAAGTGGTACAAGGCAGACTTCGGAGGCACAGATGAGAAGCTGTTGAACTGGATCCTGGAGCACATGGGGGACTCTCCCAAGAGGTCCAGCCTGCAGAGTGTCCTCTCCTCTGGGAAAATCAAAGTCAGCTACCTGCCCTACGACTGGAGCACCAACAGCTCTCACTGAGGCAGAGTAACAAGCCATAGGAACACACTGTTCTGTCtacaacacagagaaacacacagctcAGCCTGCAGACATGTCTATCCTCAGTAAAGAGGTCTGTGTGTCTAACCCTTTCTTTCAATCTGCTTCCCTACCCTCCCACAGCATGTGAACCTATAGTTTAAACTGGTTTTACTTCCTCTTCTTACTGGGTCTTCCATTTTCAGTCTTGGAAGTGCTAATGCTGCATTTTAGCACGCATCTACTTATTATACATTTGTTTTATCATTgattataaatatatttattgatACTGTATATGTTAGGAAGGCTTGATTAATTCCATGCATGTTTATGATCCAATTCAACATTTAAAGGACACATTTGTACTTTTTCTAACAAAATAAAAAGTTAACTATttataaatttaaaaaaagatctAAAACTGTTTAGTAAAACTTATCTTATCCCAAATGGTTTGTTCATCTGCTTTATGCACACCACATTGTGCTGGTTTCCGTATAGCCAGGTACCAGTACCTTGTTCTCCAGAAAGAGCTTTGTATTGTGTAGCACACTGAGTCTGTTCTAGCCCATCTGTTTTTAGAACTCTCCCACGGTATGACAATGGAGGGGTATGTCTCCCTCTTTACCCACAAATCACTTGTGTGTTTATCTCAGGTCAGCTGCCCCATGATGCAATGGTAGGACTTCTTGTATGAACAAAATCTGGAAAACTGTTGTCATATCACTATAACATGTAATATCTGTATCATTCATATACTTGCAGTGTACTGCACTATTTCTGTCAAATCCTGATGTAGCTTAACCATTTGCTCTGTCTCCCACTCTGATGTTTGGCTTTGTTTGTTGGGTTTCTGTGAGGCTTGCTGTACCTCTAGTGAAGCAGATTCTCCAGTGAGAGGAATAACTCTCCTGCTCTGAAGGCAAAGCCGACCTTAGATACTGTTTAGAAGTATTACTAGGCATTACTATTTTTACTGTCTCATTCACTCACTGAAATGCATGTTACAATGACTGGAATGCATTAGTTTGTTTGATGCATGTACTACTGTATGCTTGGGATGCTGAATCCTCTCATCCTGAAGCCTGTAGTTAGAATATATGACCCTGTTCTCTAGCCAGTGCCTTCTAACCctgcatgagagagagagtaccTCAGACCCTGGCCACATCTATAGCTAGTACTCCTATTACAACTGCTCCTAACCCCTACTGCCAACAACAGGCACCAGTACTCCATATTAACAGAGTTATAACTACTACACTGGTAGACATGTTGCCGGGAGATTCCAGTTGGTCAGTGTTCTTTACTCCTGGTCCTGGATAGCCACAGTATGTGcaagcttttgttccagccctgccCTAACATACTTGTTTCAGACCTTGATTAGCTCCGGGACCAGTAATGAACACTGCTTTAGTAAGGTTTCATGCATCTGCAACAGTAGGGGCTTGTACTCTGAATGATACCCTAAAAGTTGGAGCTCAGTCTGCTCTGACGACTACTGTACTTCCCTAAACTTACCTCATCTCTCTTTGTATTTGTCAGGGGTAAAAATGTGATGCAaacctgtagagaacaacactgtcGTGGCTTTTGCCTGGATCCAACTATGACCTAACTCTGAAGCAATACTTTTTATGATGGAAATGATGCAATTTGTCATCTGAAATAAATATCTTATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324562 lncRNA upstream 85728 64768905 ~ 64769171 (+) True G286291
TU324555 lncRNA upstream 91048 64763618 ~ 64763851 (+) True G286284
TU324553 lncRNA upstream 91378 64762898 ~ 64763521 (+) True G286282
TU324511 lncRNA upstream 130567 64723619 ~ 64724332 (+) True G286240
TU324499 lncRNA upstream 142711 64711699 ~ 64712188 (+) True G286229
TU324631 lncRNA downstream 7173 64869147 ~ 64869374 (+) True G286355
TU324632 lncRNA downstream 8230 64870204 ~ 64870647 (+) True G286356
TU324633 lncRNA downstream 8735 64870709 ~ 64871001 (+) True G286357
TU324634 lncRNA downstream 9268 64871242 ~ 64871451 (+) True G286358
TU324644 lncRNA downstream 21176 64883150 ~ 64884207 (+) True G286367
XM_021597662.2 mRNA upstream 472108 64380591 ~ 64382791 (+) True LOC110520382
XM_021597663.2 mRNA upstream 880423 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 954706 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 965688 63888258 ~ 63889211 (+) True LOC118944562
XM_021597640.2 mRNA upstream 1172657 63626178 ~ 63682242 (+) True gtf2f2b
XM_021597675.2 mRNA downstream 46672 64908646 ~ 64914396 (+) False insig2
XM_036974923.1 mRNA downstream 46672 64908646 ~ 64914396 (+) False insig2
XM_021597674.2 mRNA downstream 46673 64908647 ~ 64914396 (+) False insig2
XM_036974924.1 mRNA downstream 152317 65014291 ~ 65029795 (+) True marco
XM_021597682.2 mRNA downstream 271295 65133269 ~ 65146515 (+) False steap3
TU324010 other upstream 547539 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 770917 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 1109406 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 1109406 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 1132835 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 247282 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 299417 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 398471 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1172446 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1687848 66549822 ~ 66550487 (+) True G288252

Expression Profile