RNA id: TU324602


Basic Information

Item Value
RNA id TU324602
length 2008
lncRNA type sense_over
GC content 0.41
exon number 3
gene id insig2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64908646 ~ 64914396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTAAAACAATAAGGTCAGTGACTAAATGCCCAGCTAAAATGATGGGCTTTTAAATGTGAATAAACAAGCCCGTTTACAAGAAAGAACTTTACTGAGTAGAGCCCATGGTTCCTGTGTGGACTATCCTACTACATAATCAGCTGTCCTTAACCCCTCTCAGAAAGTGGACTTTGCGAACAACGTGCAGCTGTCCCTGACGCTGGCGGCCCTGTCCATCGGCCTCTGGTGGACATTTGACCGGTCTCGATCCGGCTTTGGCCTGGGGGTGGTCATCGCCCTGCTGGCCACTCTATCCACTCAGCTCCTGGTCTACAACGGAGTCTTTCAGTATACCTCTCCAGATTTTCTGTACATTCGCTCCTGGTTACCTTGCATCTTCTTCGCTGGTGTGATAACCATGGGGAACATAGGACGACAGCTAGCCCTGTACGAATGCAAACTTATGTCAGAAAAGACTCATCAAGACTGAGAGAAATTCTGGCTATATCAAACTTTTGCACAAAATTACATTTTCGTAGCAACAAAAAGCCAAAAGGGGATGGTAAAGGACATCTGTATGCAGCGTTGATGGAGATTGGTCAACCTTGGAGGCGGAGCAGTCATCCACAAGCAACAAATGATGTGCTTCTGCTTTGCTGAGTGCTTTACCGTGGAAAATAGTGTTTTGGTTGGTTCTTATGTGCCCTTTCTGGGCCTAGGGGGACAGACACCAGCTCGCTTTATTATAAGCATTCAATGGATGTCTAAGGAGAGGAATAACAACtaccgatgtgtgtgtgtggtaggtaggCCCCATCTACAACGCAATCTGTGATTGCAACTCAACGGGCACCAATATTAGTGTAGCTCTGCTGTTGTTCAGGGCACTTTCGGCACCAGTGGTGTGAAACCTTTGGCTCCATCGTGCCAAACAGGACCATCTGAATTATTTTCTTTCTTCATCCATTCTTTCTATCCTTTATCTACTGGTAGAAGCTGCAGTGTATATAGCCCATATATGTAGAGACATTTATTCCATGCTTTTACAATGTACAATTATTTTTTTAGGCCAGTAATGTCTCTGTTTGCTGGCAGTCATGAAGGGGTGAAGTGTTCAGTGTTGCACTTATTTGTGCCATCCCAGCGTTATATCAAGGCAACCAGCATCCTGGGTCCAGTTTGGCATTTCATCCAGCCTTACCAGACCCTGCTTTTCATTCATTTCATTTTGTAATAAAACGCTCATAGAAGTTTGTGGGCAAATTTCACTTCATTAACTTAATTTTGGTTAATTTCCTAAATTCAAAATTGAATTAAACCAAACCCTGATGAGATCCAATCAGAGACCAGGCTTCCCATTTCATTCTCCAACCTCCAGGTGCACACAAGTATCCACATCATCAGTGGGTTCTTGGGTCAGGCATCTAATGCCAGATCtgcatttttttaaatagaaaaattAGATATAATACAGTGTTTACATTCCTAGATGCAGTTGGACTTGATTTAGGAACCTCACTTCTCATCGTTAAGATGGTCTTATTGGAAATAGAGACCATGAAAAAGGGATGGCTTTCTATATCTAGAAGTTGTTGTGAGACTGCTAAGTGAAGGAATTTTATTCAtatgttatttttttactttagaaaAACTAACAAATTTACCATGATGGTTGAATTAGAGGATGCTGAAAATGTGTTAGTGTCTCAACAGTGTTTTTGTAAAATATTGTTTGTAATTTCACTGTGCATGATAAGGCAAACAAACTGCCAATGACTACAGAGGAAAGAAAATTAAGAACCAACAATCAATATTAAAATGACTAACTTGGATATCCTAGCATGTCAGCGTGATAGCTATGGTGCATTTTTCTAGAAATAAGATGAACTAGTTTTATTTCATCCATCTCTTCAGGAAGTAGAGGATATAACTGGttgaactgggacattttcatccTCTCACCAAACAGAAAATCTGGAACTTGTGCAATCTCTTTGGTTCAATAAAGAACATGCCTTTTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324644 lncRNA upstream 27442 64883150 ~ 64884207 (+) True G286367
TU324634 lncRNA upstream 40198 64871242 ~ 64871451 (+) True G286358
TU324633 lncRNA upstream 40648 64870709 ~ 64871001 (+) True G286357
TU324632 lncRNA upstream 41002 64870204 ~ 64870647 (+) True G286356
TU324631 lncRNA upstream 42275 64869147 ~ 64869374 (+) True G286355
TU324669 lncRNA downstream 8807 64923188 ~ 64924561 (+) True G286391
TU324679 lncRNA downstream 16146 64930527 ~ 64931115 (+) True G286398
TU324805 lncRNA downstream 46552 64960933 ~ 64961149 (+) True G286508
TU324829 lncRNA downstream 62087 64976468 ~ 64976692 (+) True G286532
TU324832 lncRNA downstream 65228 64979609 ~ 64980333 (+) True G286535
XM_036974921.1 mRNA upstream 49675 64854740 ~ 64861974 (+) False zgc:152951
XM_036974924.1 mRNA downstream 99910 65014291 ~ 65029795 (+) True marco
XM_021597682.2 mRNA downstream 218888 65133269 ~ 65146515 (+) False steap3
XM_021597683.2 mRNA downstream 218888 65133269 ~ 65146515 (+) True steap3
XM_021597686.2 mRNA downstream 246961 65161342 ~ 65166580 (+) False LOC110520396
XM_021597690.2 mRNA downstream 257248 65171629 ~ 65174336 (+) False tmem37
TU324010 other upstream 604289 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 827667 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 1166156 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 1166156 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 1189585 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 194875 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 247010 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 346064 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1120039 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1635441 66549822 ~ 66550487 (+) True G288252

Expression Profile