RNA id: XM_021597678.2


Basic Information

Item Value
RNA id XM_021597678.2
length 1818
RNA type mRNA
GC content 0.47
exon number 2
gene id en1a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64987753 ~ 64995840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGATCGAACTGTCATACCTACAGTGGTGAAAAGCTCGGGGCTGCGAGAGGAGAGCGCAAAGCCTTGTCAGTCTTGTCATGTCGACGACCATGACACGTTGGAGCGTTACGCACGAGGGATGTCAACAATTTAGAAATCAAAAAGTGCCCCAAATCAGAGAGTTATTAATGAGCCTTTAGTGGTCACCGTATTGCTTCATTCTTTTATATTTGGATACCAATACACACCAACAAGTGGAATTAGTTAGGAGCCTGGATCGACCCTTTTGCAGTCCCTTTCAGCAATGGAGAAGCAAAGGGCTCTACACAGCCCGGAGTCTAGTGAAGGGGAGAGCGTTTCTCCTTCTCGCAGTCTGCCTTCGCCGCCCATCCTGCCTCTCCAAGCAGCGCAGCAAGCGCACAGAACCACGAACTTTTTTATTGACAATATTCTGCGGCCAGATTTCGGCTGCCGGAAGGAGCATGGTTTAGGGGCTAGGGAACGTGCGCAGACTTCCAGTCGAGAGCGCGCCCAACCTTTGGTTGCCAGGCCGAATCATCCTGGAACCCCATGCCAGGACTCTAACTGCAGCAGCGACAGCACTTCTTCCTCCACCTCGTCCTTGGCCTTGTCTCCCACCCCCCAAAAGAGCACCTCGTCATCGAAGGCTGACGAGAGCTCTGGAGGCAGCACGCCAAAGTTCGGCGAGAACACATCTTCTGTCATGGTTGTGAACGGCGGTAGTGGCGGCGCAGCGCCCAAAGCCGAGTCCCAGCCGCTGCTGTGGCCTGCCTGGGTGTACTGCACTAGATACTCGGACAGGCCGTCATCTGGCCCAAGGACACGGAAATTGAAAAAGACGAAAAATGAAAAGGAAGACAAGCGACCCAGAACGGCGTTCACGGTTGAGCAGCTCCAAAGACTGAAAACTGAGTTCCAGGCCAACCGTTATATCACGGAGCAGAGGAGACAGTCTCTAGCTCAAGAGCTCAACCTCAATGAGTCACAAATCAAAATCTGGTTCCAAAACAAACGGGCGAAAATAAAAAAGGCCAACGGCTATAAGAACGGCCTGGCTCTCCAGCTCATGGCGCAAGGATTGTACAACCATTCCACCACCACCATTCAGGAAGACAAGGAGGAGAGTGACTGAGACTTCGCTTGCAGGAGTCACCTTTTGGGGGCACAATATTTGTGGAAAGTCAAGGCTATTGTAAAGAGATTTTCCATTTGTTGATAGGGCTAAATGTGTAGCCTATATGTGGACATAAACTATCAAAGTATGCCTACAAACTACAAACATGAATGAAAATGAATAGCCCATAATGAGACGTTGTATATTTAATTTAAGAAGAAGGGGTAAGCTATAGGAATATGACTACTCATCCCGCACTTGCTGGATAATTATATGATTGTTATCTTTGTCGCTTTAGGCCTAATGTGTTGTGATCTCTCTCTTATATCAAACCTCGATGAACATACAGACTGCGATCTGCCACTTCAAGCCAAAGATTTTATCGGAAAAAACAGCCTGAAAAAACTGAATCTCCCTGTTATCGTACCTTTTTCCTGAACTGCGAGTCTCTAACAATCAGTAGACCGCTGTTGTCATTAGTTGCCTGCCGCTTGATGTAGCCCCTCAACCCGTTTGGGTGGAAAGGATATATGACTCAACTCGTGTTGGATTCACCTTATATTGGAAtaccacaaagacacagcagcATCAGACTCTCTTGAAATATATGTAATCTCCCTCCATGATTAGAGGGGATGCATATACTAAGCTACATCTAAACAATGTTAACAAATAAACATTTTTCTATTGGAAAAAAGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324833 lncRNA downstream 9229 64978246 ~ 64978524 (-) True G286536
TU324820 lncRNA downstream 16156 64971258 ~ 64971597 (-) True G286523
TU324817 lncRNA downstream 18294 64969235 ~ 64969459 (-) True G286520
TU324753 lncRNA downstream 59467 64891105 ~ 64928286 (-) True G286463
TU324710 lncRNA downstream 202902 64783433 ~ 64784851 (-) False G286426
TU324897 lncRNA upstream 5077 64997228 ~ 64997456 (-) True G286579
TU325034 lncRNA upstream 123097 65115248 ~ 65115510 (-) True G286687
TU325048 lncRNA upstream 132304 65124455 ~ 65124772 (-) True G286701
TU325049 lncRNA upstream 133379 65125530 ~ 65125741 (-) True G286702
TU325050 lncRNA upstream 133979 65126130 ~ 65126346 (-) True G286703
XM_036965063.1 mRNA downstream 91770 64884338 ~ 64895983 (-) True LOC118944694
XM_021597666.2 mRNA downstream 96766 64862026 ~ 64890987 (-) False LOC110520386
XM_036974918.1 mRNA downstream 96766 64862534 ~ 64890987 (-) True LOC110520386
XM_021597667.2 mRNA downstream 104718 64862026 ~ 64883035 (-) False LOC110520386
XM_021597673.2 mRNA downstream 131902 64852503 ~ 64855851 (-) True LOC110520388
XM_021597681.2 mRNA upstream 114578 65106729 ~ 65108799 (-) True c1ql2
XM_021597684.2 mRNA upstream 154369 65146520 ~ 65150171 (-) True c3h2orf76
XM_036965070.1 mRNA upstream 181807 65173958 ~ 65182654 (-) False LOC110520397
XM_021597696.2 mRNA upstream 328743 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 334011 65326162 ~ 65329900 (-) False gjb8
TU324819 other downstream 16998 64969549 ~ 64970755 (-) True G286522
TU322065 other downstream 2272576 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 7398570 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 7584178 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7689991 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU324898 other upstream 22108 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 62549 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 62549 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 243029 65235180 ~ 65235908 (-) True G286953
TU325373 other upstream 306056 65298207 ~ 65300417 (-) True G286985

Expression Profile