RNA id: XM_036965070.1


Basic Information

Item Value
RNA id XM_036965070.1
length 2381
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110520397
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65173958 ~ 65182654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACAGCGTCGCGCATTGAGCAGTAGGCGGGGTCTACAGAAAAGGGAATATCTATTTTACGCTGCATCTGAAGTTTACAGTTTTGTGTAAATCAGGGTTGAGATAACCAGGACAAGACACTGTCACCTGTTTTCAGGATTTAGGCACCGAATAACTCTCTGCTTCGGTCAAGTAATATTCCTGGAATTTTCTATTGATATTTTTTGTCCAGGTTAACATTGCGCACCTGAATTGTCTCTCCTAGCGGATACCgtataaatatatttgtttattttatttctcaATTTGTCTTGGCAATACCATAGCTGCAATGAGGATAAACAGACAATTGCGTAGGATTGTGCTTATAGCAGCTCTTCTCGACTTCTCTTCCAATGTGAAGGCCATTCCTCCAGAATGTGACCCGGACTACATCTTACTCCAAGATGAGGAGAGCTGCTTCAAGGATCTGTTCAAGATCAACATCAGCCAGGCTGACTCTCAAcaaccaggcaaAGAACCTTTAGAATACCTGTGGATGACACCCATTATGTCTCCTGTAGAGTGCAGAGGTTTGTGGGACCACCTGAACTGCTGGCCTCATACTGATGTGGGAGAGACTGTGTCACAGCCATGTCCCAGATTCCTCCGAACCACAGgCAGAGTATACAGGAACTGCACAGAGCACGGCTGGACTGAGCCATTTCCTCCACATGAGATAGCCTGCGAGTATGCCTTTGAGACCCTCACCTTCCCTTTTGAGGCACCCAGGTCCCATGGCTACTTCCTCTATGTGCAAGTCATGTACTCGGTGGGCTATGCTATCTCTACTGCGTCTCTTACCATCGCCACTGCCACACTCTGTCTGTTCAGGAGGCTCCACTGCACCCGTAACTATGTCCACATCCAACTGttcctctccttcatcctccgAGCCACCTTCATCTTCATCAGAGATGCTGTGCTCTTCTCCTCTGATGACCACTTCCACTGTGACTCCTATCCGGTCAGCTGTAAGATTGCAACATCGTTCTCCAACTACTGCATCATGGCCAACTACAGCTGGCTGCTGGCCGAGGGACACTACCTGTACAGCCTGGTCAgtgtctccctcttctcccagaAGAGGCACCTCAGGTGGTACATCGTCCTGGGCTGGGGTTCCCCAATGGTCATTATAGTAGCCTGGAGTTTGGCAAAATATACCCAGGAGAATGAAGGgtgctgggagaggaggggacacgAGGGGATCTGGTGGATTCTCAGAGTTCCTGTTCTCCTCTTCATCGTTGTTAACTTGCTGTTTTTTCTGAGTATCATAAGAATCCTGGTGGCCAAGTTGAGGACACAGGAAATGCATAGAAATGAGTTGAACCAGTATAGgAGGCTTGCTAAGTCCACCGTTCTCCTGGTATCTCTCTTTGGTTTGCACTACGTCCTCTTTGCATTCCTCCCACATAAagtcagtgaaatatggaacttTATCGAGCTGGCTTTTGCTTCCACTCAGGGGTTTGTAGTAGCAGTTCTATATTGTTTTCTGAATGGAGAGGTTCAGTATGAGGTTCAGAGGAGGTGGAGGCGATGGAGGCTGAAGCAGCATCTACCTGGGGAGGCCAGGTGCCAACATGGCTCCATGAGTCAGAGTGTAGGGGCCCATACCCAGGTCTCCTTCCTGACCCGGGGACCCTCCACACGCCATTCTAGTCTGGTGTAGCACATCCAGTCACTCCTCACTATACTGTACCTACGAGGCTTTGTCAATGGATAGGTGCCATGTGTGTTCCACAGTCTGTCTGTGACATTCTGACATTCCTGTTTGACTCTTGAAGGATGAGGcctcctttttattttttttctgttGAGTGTATATGATCTTTGACCGGCATGGCATTTAGTGACAGGACTGGACCTTTGGTTGTGGGGTCAAAACGCTGAAACATTTCTGTGCATGGGTTTGCTATTCTGACCTTTCCTCATCTTCACCTGCAGTCACGCATGGCACACACACTGCATGACTATCAGGAATGCACCTACCCACCTGTACAATTGTCAATATGACCAGGTATTCTAAAGGACCATGTGGACATGCTTAATTTTATTTATTGGCTTTCTAACATGTATATTCCAAGTGTTACATATGATATGTGTATGTTTAACCATGAAAACAAGAGCTGTTGTAAAGTTTAAAGGAATTTGTGTGAATGTATTGGTGACAGTTCCTAGAATTAATTTAACCATGCTATGTTAGTTATATTACATGTGCTTCACACATGATCAATGATGGTACGACTTGATGACATCAACTCTCAcaataaatgtattttaaaagtCATTATCACCACGGGGTgagatacttattttccaccatcatttgcaaataaattcataaaaaatccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325297 lncRNA downstream 343 65173339 ~ 65173615 (-) True G286921
TU325291 lncRNA downstream 7392 65164639 ~ 65166566 (-) True G286918
TU325288 lncRNA downstream 18952 65154483 ~ 65155006 (-) True G286915
TU325287 lncRNA downstream 19969 65153353 ~ 65153989 (-) True G286914
TU325285 lncRNA downstream 21830 65151929 ~ 65152128 (-) True G286912
TU325301 lncRNA upstream 3617 65186271 ~ 65186516 (-) True G286925
TU325305 lncRNA upstream 8315 65190969 ~ 65191506 (-) True G286929
TU325332 lncRNA upstream 48780 65231434 ~ 65231863 (-) True G286951
TU325333 lncRNA upstream 49392 65232046 ~ 65232660 (-) True G286952
TU325303 lncRNA upstream 56414 65239068 ~ 65240985 (-) True G286927
XM_021597684.2 mRNA downstream 23787 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 65159 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 181805 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 181807 64987753 ~ 64992151 (-) False en1a
XM_036965063.1 mRNA downstream 277975 64884338 ~ 64895983 (-) True LOC118944694
XM_021597696.2 mRNA upstream 138240 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 143508 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 143508 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 148178 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 148178 65330832 ~ 65362594 (-) False cryl1
TU324969 other downstream 97973 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 118747 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 144222 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 203203 64969549 ~ 64970755 (-) True G286522
TU322065 other downstream 2458781 62714575 ~ 62715177 (-) True G284018
TU325334 other upstream 52526 65235180 ~ 65235908 (-) True G286953
TU325373 other upstream 115553 65298207 ~ 65300417 (-) True G286985
TU325443 other upstream 264171 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 397137 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1660017 66842671 ~ 66842881 (-) True G288578

Expression Profile