RNA id: XM_021597697.2


Basic Information

Item Value
RNA id XM_021597697.2
length 1608
RNA type mRNA
GC content 0.50
exon number 8
gene id cryl1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65330832 ~ 65362601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaaataaaatgTTCTCAGCTTAGAATGTAAAAAGTAACGCTATAGCTAAACAAGACCATCACCACATGATTAATAAAATAATGCAAATCGGTGAATGTACATTTTCATGATTCATTTTCTTCGCTCGTTTTATTTGTAACATTTTGGAGCACCGTACAATCATGTGACTAGTAGGGGCGTTGCAGGATTTGCAGGCAGAGTATTCTTGGAAAAACAGTTACTGTTTTCAATGTTGCAATAACTTCCTGCTAATCAAAACTGCAAAATGAGTTCCTCTGAGGAGAAGACCATTACCGTTATTGGCAGTGGGCTGATTGGGCGCTCCTGGGCCATGGTGTTTATAAGTGGGGGCTACAGAGTGAAGATCTATGACAACCAGCCAGGCCATGCTGCCAGGGCCATCCAGGAGGTCAGGAAACAGCTTGAAGATCTGCAGGAAGAGTGCATGCTGAGGGGGGATCGAAGTGCCTCAGAGCAGCTAGCCCTACTGAGCAGCCACAATGACCTCTGCCAGGCACTAGAGGGAGCCTTCTTCGTCCAGgaGTGTGTCTTTGAGGAGATCGAGGCCAAGCGGAGTGTCTTCCAGGTGGTGGAGAGTCATGTGGGAGAGGGGGTGATCCTCAGTAGCTCCACCTCCTGCCTGTTGCCTAGCAACATCTTCTCCCAGGTCCAGAACCGAAAGCGCTGCATTATATCTCACCCGGTGAACCCGCCCTACTACGTGCGTCTGGTGGAGCTGGTGCCACACCCAGAGACGTTGGCGGGGGTGATGGACACTACCCACGCCCTGATGACTGCCGTAGGCCAGGCTCCCGTCAGGCTGAAGAAAGAGATTGACGGCTTCGCCCTAAACCGTGTGCAGTACGCCATCATCGCCGAGTCCTGGAGGCTGGTCAAGGACGGTGTCATTTCAGTCAAGGACATTGACCTGGTGATGTCAGAGGGGCTGGGAATGCGTTACGCTTTTATTGGTCCCATGGAAACCATGCACCTCAACGCACCTGAAGGTCTGGAGGACTATCTCCAGCGCTACAGAGAGGGCATGAAGAGGGTTCTGAACAACTTTGGACCTGTTCCCGAATTCTCTGGGGAGGCAGCCGAGCGCATCAACAAAGAGATGTGTGAGCTGATCCCAGCTGACCAGCAGCACCTGtctgccaggagagagagaagggaccaGCTTCTCATGGGCCTGGCCAAGCTCAAGAAGTGACCCCAGGACTATCACCACCACTGATGAACAGGGTGGGCTGAGGTCTGGGACTCTGCTGTCCATCACTCAGCCAAAGAGCATGGTGATGAGGATGATCTGATCTCTCAGTAGTGCCTACACTGGGGATGTTACTGAATACTGTAGCCCTGAGTCCTCACACACAATCAACCATTCTGGGATGATACTATAGCCCTCACACACAATAAAGCAATCTAGGGATTGATTCCCATGCCATCTCAGAAATCTGGCCACCACATGTTTTATGCAATCAACACGTTGATCAGACAAGGGAATTATTGGTTTAGTCATACCACACTGGCTTCTTGAATTATGAATATGAAAAGTTAATGTCAAAACCTTATGGGAGATTTCTTTATTAAAATGTTGAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325367 lncRNA downstream 26334 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 29908 65300694 ~ 65300924 (-) True G286986
TU325342 lncRNA downstream 78044 65251989 ~ 65252788 (-) True G286961
TU325341 lncRNA downstream 78983 65251643 ~ 65251849 (-) True G286960
TU325340 lncRNA downstream 80334 65250231 ~ 65250498 (-) True G286959
TU325442 lncRNA upstream 83485 65446079 ~ 65446302 (-) True G287041
TU325444 lncRNA upstream 85474 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 164354 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 191936 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 193833 65556427 ~ 65556658 (-) True G287083
XM_021597700.2 mRNA downstream 303 65326162 ~ 65330529 (-) True gjb8
XM_021597699.2 mRNA downstream 932 65326162 ~ 65329900 (-) False gjb8
XM_021597696.2 mRNA downstream 4818 65320894 ~ 65326014 (-) True LOC110520402
XM_036965070.1 mRNA downstream 148178 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 180661 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597701.2 mRNA upstream 24929 65387523 ~ 65390329 (-) False eef1akmt1
XM_021597703.2 mRNA upstream 24929 65387523 ~ 65390331 (-) False eef1akmt1
XM_036974948.1 mRNA upstream 24929 65387523 ~ 65390331 (-) True eef1akmt1
XM_036974949.1 mRNA upstream 30255 65392849 ~ 65432153 (-) False xpo4
XM_036974950.1 mRNA upstream 30908 65393502 ~ 65432145 (-) True xpo4
TU325373 other downstream 30415 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 94924 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 254847 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 275621 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 301096 65014259 ~ 65029736 (-) True G286580
TU325443 other upstream 84231 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 217197 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1480077 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2264238 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2521158 67883752 ~ 67886232 (-) True G289653

Expression Profile