RNA id: XM_036974949.1


Basic Information

Item Value
RNA id XM_036974949.1
length 4129
RNA type mRNA
GC content 0.56
exon number 22
gene id xpo4
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65392849 ~ 65432153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGACCATGATGGCGGCGGTCGGTTCACCAGAAGTGATTTCACAGCTGGAAAGCGCTGCCAAAGTTTTAATGgcaCCGCCGTCCATGGTCAATGCAGAGCAGAGGCAGCATGCAGAGCACATATTCCTCTCCTTCAGGAAGTCTAAATCACCCTTCGCTGTCTGCAAGCACATCTTAGAGACCAGTAAGGTAGACTATGTGCTGTTCCAGGCTGCCACAGCCGTCATGGAGGCGGTGGTACGGGAGTGGATCCTGCTGGAGAAGGCCAGCATCGAGTCGCTCCGAACATTCCTCCTCACCTACGTCTTACAGAGACCCaatcTGCAGAAGTATGTCCGGGAGCAGATCCTGCTGGCTGTAGCTGTCATAGTAAAGAGAGGTTCTCTGGACAAGTCGATCAACTGTAAAGGCATCTTCCACGAAGTCAGCCAACTCATCAGCAGCGGCAACCCCACAGTGCAGACGCTGGCCTGCTCCATCCTGACGGCCCTCATCAGTGAGTTCTCCAGCTCCAGTAAGACCAGTAACATCGGCCTCAACATGGAGTTCCATGGCAGCTGCAAACGCATTTTTCAGGAGGATGACCTTCATCAGATCTTCATGTTGACCATGGAGGTGCTGCAGGAGTTCAGTCGCAGAGAGAACCTCAACGCTCAGATGTCCTCAGTGTTCCAGAGATACCTGGCCCTGGCCAATCAGGTCCTCAGCTGGAACTTCTTGCCGCCCAATCTGGGGCGCCACTACATCGCCATGTTTGAGTCCACCCAGAACGTGATGCTGAAGCCCACAGAGACCTGGAGAGAAGCCCTGCTCGACACCTGTGTCATGGACCTCTTCTTCACCGTGCACAGAAAGATCCGTGAGGACTCAGACATGGCCCAGGACTCCCTGCAGTGCCTGGCCCAGCTGGCCTCCATGCACGGCCCCATCTTCCCTGATGAGAccgctcaggtctcctacctggcccACCTGGTGGAGGGGCTTCTCAGCATGATCAATGGGATAGAGATCGAGGACTCTGAGGCAGTAGGTATCTCTAACATCATCTCCAACCTGATCAGCACGTTCCCCCGTGTCATCCTGACTGCCCTGCCCAGCGAGCTCTTCACCTCCTTCATCAACTGTCTCACCCTCCTCACCTGCTCCTTCGGACGCAGCGCCGCCCTGGAGGAAGTGCTGGATAAGGATGACATGGTATACATGGAGGCGTATGACAAGCTTTTAGAGTCATGGCTGACCCTGGTTCAGGATGATGAACATTTCCCCCGCGGTTGCTTCGTCCAACCCGCCGTTCAGGTCTTCAACTCCTACATCCAGTGTCACCTGGCCGCCCCCGACGGCACCCGCAAtctgACAGCAAACGGTGTGGCATCTCATGAGGAGGATGAGATTAACGAGTTACAGGAGGACGACAGAGAGCTGTTCTCAGACCAGCTGGCCAGCATTGGCATGTTAGGACGCATCGCAGCCAACCACTGTATCCCCCTTCTGACCAGTCTGTTGGAGGAGCGGGTGACGCGGCTCCACGGCCAGCTCCAGAGGACCCAGCAGCACCTCATGAACTTGTCTAACCCCGGATCAGTGGACCGCAAGGTCCTGGATGACCTCTACGAAGACATCCACTGGCTCATACTGGTCTCAGGCTACGTCCTGACAGATGACCCTCAGGGTGAGACTCCTCTGATCCCAGCGGAGGTGATGGAGTATTCTATCAACCACTCTACTGAGGTGGACATCAACACCACCCTGCAGATACTGGGCTCCCCCGGGGAGAAGGCCTCCTCTATCccagggtgcaacaggacagacTCTGTCATCAGGTTGTTGTCAGCGGTGTTGAGGACATCAGAGGTGGAGTCCAGGGCTACGAGGGCCAGTCTGACAGAACTGCTCAGCCCTCAGATGGGGAAGGACATTGTGTGGTTTCTCAAACGCTGGGCCAAGACTTACCTACTGGTGGACGAGAAACTCTACGAACAGATCAGTATCCCCCTGAGCATGGCATTTGGGGCGGACACGGAGGGGGCCCAGTGGATTGTGGGATACCTCCTGGAGAAGGTGATCAACAACCTGTCTGTGTGGAGCTCTGAACCTGAACTGGCCAACGACACGGTGGAGCTACTGGTCTGTCTggtggagaagagggagagGGCCAACATTGTGGTACAGTGTGAGAACTGGTGGAACTTGGCAAAGCAGTTTGCCAGCCGCAGTCCTCCCCTAGACCTGCTGTCCAGCTCAGTACAGAGGTCCCTGATGAAGGCCCTGGTTCTGGGGGGCTTTGCACACATGGACTCAGACACCAAACAGCAGTACTGGACAGAGGTGCTGCACCCCCTCCAGCAGCGCTTCCTCAACCTGATCAACCAGGAGAACTTTCCTCAGATCTGTCAGGAGGAGAGTGTGAAGCGGGAGATCGTTGCCACCCTGGAGGCCCTGTGTGGCATCGCCGAGGCAACGCAGATCGACAACGTGGCGTCTCTCTTCAGCTTCCTCATGGACTTCCTGTCCAGCTGCATCGGCCTGATGGAGGTGTACCGCAACACACCAGAGACGGTCAACCTCATCATCGAGGTGTTTGTGGAGGTCGCCCACAAACAGATTTGCTACCTGGGAGAGTCGAAGTCTATGAAGCTGTACGAGGTGTGCCTGACTCTGCTGCAGGTCTACTCTAAGAACAACCTGGGCAGGAAGAGGGCTGATGTGGCTGCTGAGGAGGACCAGTACCAGGACCTGCTGCTCATCATGGAGCTGCTCACCAACCTGCTCTCTAAGGAGTTCATTGACTTCTCAGACACAGATGTTGGAATAGATGAGGTGTTCCGGGGGCAGGAGCAGGGTTCGGGAGCGACAGGTCGGTCGGTGTCGGCTGCAGACGTAGTTCTGTTTGGGGTCAACATCATTCTGCCACTCATGTCTCAGGACCTgctcaagTTCCCATCTCTGTGTAACCAGTACTACAAGCTCATCACGTTCATCTGTGAGATTTTTCCTGAGAAGATCCCCCAGCTACCAGAGGAGCTGTTCAAGAGTCTCATGTACTCCCTAGAGCTGGGCATGACATCCATGAGTTCAGAGGTCAGCCAGCTGTGTCTGGAGGCTCTGTCCCCCCTGGCTGAGCAGTGTGCCAAGACCCAGGAGAAAGACACGCCCCTCTTCATTGCTACACGCCACTTCCTCAAGtTGGTGTTTGACATGCTGGTACTGCAGAAACACAACACAGAGATCACAGTGGCAGCGGGAGAAGCTCTCTATACACTAGTGTGCCTGCATCAAGCGGAGTACAAGGAGCTGGTGGAGTCTCTGCTCGCCACCCAGCGAGATGCCGTCATCTACCAGCGACTGGCTGACGCCTTTAACAAGCTGACAGCCAGCAGCACGCCCCCGAGCATGGACCGCAAGCAGAAGGTGGACTTCCTCAAGAGCCTAGAGGAGTTTGTGTCCAACGTAGGTGGGCTGCTCTGTGTCAAATAACCACTAGCCCCCAAACTCCCCTCCTCCCTAGCACCTATTTCTATGTCCAACCCGCTCACAGACTATCTACCTTGACCACGCCAAACCATGAAACAGAGACTGACAGAGCTGAGGAGCTGCACTGTTAGACTGTGACATAAAGGGGGAAGGTTGAGACACTGAAGGGAGCAGGGGTGTGGACTGGACTATAGTGTCGTTTGGGCAGGTTTCCACGCCTGCTCCTCCCCCTTTTCATCAGAGGCCCCCAGcgcacacatacagtgggggagGGGGGATCAGAGAGGGATGGACTCGTCCCCTCAGCCAATCATTTTTTTGAGTTTGCCAGTGGGAGGGTTGGGATGAACACAACAGGAGTAGGTGCCAATCTGTTCTGAGAACGctatgcctctccctctctccctgcctctacaccctcgccctccccccctccccagaGTGCCTTTGTTTTCTTGTTTGTGTCGTGTGTCGACTCCTGTGTGTCCATGTGGCCAAGCTGAGACGTGTCTTACGTACAGCAACGACTGTGCCTGTCACATACCAAGAACACGgtggaagcacacacacacagatctccaTGACACCGAGAGGCTCGATCCCGCCACCTTCGGGCTGCTGAATCTGTTAAATGGGAGAGCtgatgataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325401 lncRNA downstream 52954 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 88351 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 91925 65300694 ~ 65300924 (-) True G286986
TU325342 lncRNA downstream 140061 65251989 ~ 65252788 (-) True G286961
TU325341 lncRNA downstream 141000 65251643 ~ 65251849 (-) True G286960
TU325442 lncRNA upstream 13926 65446079 ~ 65446302 (-) True G287041
TU325444 lncRNA upstream 15915 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 94795 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 122377 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 124274 65556427 ~ 65556658 (-) True G287083
XM_021597703.2 mRNA downstream 2518 65387523 ~ 65390331 (-) False eef1akmt1
XM_036974948.1 mRNA downstream 2518 65387523 ~ 65390331 (-) True eef1akmt1
XM_021597701.2 mRNA downstream 2520 65387523 ~ 65390329 (-) False eef1akmt1
XM_021597698.2 mRNA downstream 30248 65330832 ~ 65362601 (-) True cryl1
XM_021597697.2 mRNA downstream 30255 65330832 ~ 65362594 (-) False cryl1
XM_021597705.2 mRNA upstream 5410 65437563 ~ 65459000 (-) False LOC110520406
XM_021597706.2 mRNA upstream 5410 65437563 ~ 65459000 (-) False LOC110520406
XR_005051354.1 mRNA upstream 25886 65458039 ~ 65458985 (-) True LOC110520406
XM_036974951.1 mRNA upstream 40132 65472285 ~ 65475542 (-) False ska3
XM_021597708.2 mRNA upstream 40132 65472285 ~ 65476510 (-) True ska3
TU325373 other downstream 92432 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 156941 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 316864 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 337638 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 363113 65014259 ~ 65029736 (-) True G286580
TU325443 other upstream 14672 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 147638 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1410518 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2194679 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2451599 67883752 ~ 67886232 (-) True G289653

Expression Profile