RNA id: XM_021597709.2



Basic Information


Item Value
RNA id XM_021597709.2
length 2337
RNA type mRNA
GC content 0.46
exon number 10
gene id hcn5
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65480140 ~ 65484785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaaagtcTGGCAGCCGCTCTCCTCCCACCACACCGCCTCAATAAGCCCCGTCCACAGGAGCTGTGATGGAAAATTACCCTGTGACCAAAAAGACAGGTCAGTTTAGAGCAAAGTTAGACTCGACTCTTCAGCAGCCCAGAGAAGGATGGCCAGCGCAGTCAGCTGAACAGAATAACCGTGTGCTCCTTCTGGCATGGAAAACTCCCAAGCCCCTGTCGGCAGGCGCACAGCCAGCACCTGTGGTTGGAAAGCTGTATTTCTGCCTCAGCTGAACAGGCAGTCTCTATCTGTGTACGGCAGCGAGATAGCTGTGGAGAAGGAATGTATACGCCAGCTGCAGAGTGGAGTCTGGGTCATCCACCCATTCAGCCCCATAAGGAGttactacatcatgtgtatgGTTGCCATCACATTCCTGAATTTGATTGGGATCCCCATGGAGATAGCTTTCTTAGACGGGTACAGTGGAGTGGGCTGGGAAGGTTTCAATGTCTTCTCAGACACTCTGTTTCTGATGGATGTGGCTCTGAATTTTCGCATGGGTATCATCTCTGAGGACAGTGAGGTGGCTATACTGGATATCAAAAAGATCCGTGTGATTTACCTAAAGAGTTGGTTCATACCAGATGTGATTGCAGCATTCCCAATTGGCTACATACTATTAATTGCGGAGTTACAATCCCACAGTGACACCTCCACCTCAGGTTCCAAAGCCAGTAGAATGGTGCGGATCCTCATGTTTGTCCGAATCATCAGCCTCGTCAGGCTCCTCAGAGTCTCCAGGCTTGTCCGCTTCTTCAATGAAGTTGAAAAGGTTTCAAATGCCAACTTGGAGTATGTTCAGCTGTTCTTCCGCATACTGTCTTTGTTTATGATGATGTTTCTGCTGTGCCACTGGAACGGCTGTATCCAGTACTTTGTCCCGATGCTGGAGGAGTTCCCATCTGACTGCTGGGTCAGACAAGAGAAGCTGATGAATGCCACGGTCGGTGAGAAGTATTCCTTTGGAGTGTTTCGTGCTCTCTCTCATATGATCCAAATTTCCTATGGCTCCAACGAGTCACCAACAAATGAGGTGGAGCTGTGGGTGGTCATGACCAGTATGCTGTCTGGGGCTCTAATGTACACTGTACTGGTGGCCAACGCTGCTGCCATCATAACCAACGTAGACCAAGCAGCAAAGGCCTACAAAGACAAGATGAATCATCTAGACGACTACATGACCTTCTTGAAGCTTCCTAACGACCTTCGACTTCGAATCCAGAAGTACTACGGGGCCCGATATGGGGGGAGATGGTTTGACGAAAAGAACTTTCTAATTTCAGTCTCCTCAGCTTTGAGAGAGGAGATTCTGACAGTGATGTGTTTGAGCCTGCTGAACAACGTACCCATGTTCCAGAACCGAGACGTCAACTTCCTGAACACCGTTCTCCTCCAGTTTCAGCATGAAGTCTTccaagaggatgatgtcatcttCCAACAGAATGCACCCGGAGACCGCATGTTCTTCATCGAGCACGGCCAGGTCCTGGTGGAGACAGACTCCTTCTCGCAGGAACTGGCTGATGGAGACTACTTTGGAGAGACCTGCCTCATGACCAAAGGAAAGCGTTTGGCCACGGTTCAAGCTCTGACCACCTGCCAGCTCTTCTCCCTGTCCTCAGAACGCTTCCAGATGGTTCTACAGGGCTTCCCTGATATCAGGAGAGACATGGAAAAGTTTTCACAGCAGGACAAGGAATATGTGCGACATCTCTAGTACAGTGCGGCCATTTATCAACAGTAGTGGTCACTAAGCCTGGTTCTGCAGAGGTACAGGATGTGCAGGCTtatgttccagcccagcactaacacatctTATTCTGTTCGTAGAATTAGGTGTTTTAGTCCTGTGCAGCCTGGAGCTCTCCATGACCAGGATTTGTGACCACTTATGTATTGTGTAGCTCAGACTTGGTATTGTGTAGACTGGTCTAAAATTGTATTATACTTTATATATATAAAGATTTCCTTGTTATTTATTTGTTAAACTGTGCATCATACAACCCTTAGTCTGGATTACTAATAGTTATACTCTAGATCCTCTCTGGGTGGATCCAAAACAGTATATGATATTGTTGCTTTAAGGAAGAGTGTATTTCGGGACATGtaatgctaaaaaaaaaaagggttttgaaaatgtatttattgtgaagAAATAGTATTAgaactgttttttgtttttcaaatttCCTTTATTGTGAAGAAATGTCAATGACATAATACAAGGGCAATTTGGTTATGAAACTACCAGTATGAAACAGCAGAAATAAAGAGGAAAACATGGTTTCAGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU325444 lncRNA downstream 31723 65448068 ~ 65448417 (-) True G287043
TU325442 lncRNA downstream 33838 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 140245 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 175642 65290732 ~ 65304498 (-) True G286979
TU325474 lncRNA upstream 42163 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 69745 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 71642 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 83235 65568020 ~ 65568248 (-) True G287097
TU325521 lncRNA upstream 94487 65579272 ~ 65579563 (-) True G287110
XM_021597708.2 mRNA downstream 3630 65472285 ~ 65476510 (-) True ska3
XM_036974951.1 mRNA downstream 4598 65472285 ~ 65475542 (-) False ska3
XM_021597705.2 mRNA downstream 21140 65437563 ~ 65459000 (-) False LOC110520406
XM_021597706.2 mRNA downstream 21140 65437563 ~ 65459000 (-) False LOC110520406
XR_005051354.1 mRNA downstream 21155 65458039 ~ 65458985 (-) True LOC110520406
XR_005039939.1 mRNA upstream 1099 65485884 ~ 65486801 (-) True LOC118944602
XR_002472975.2 mRNA upstream 19200 65503985 ~ 65508384 (-) False pla1a
XM_021597713.2 mRNA upstream 19203 65503988 ~ 65508384 (-) True pla1a
XM_021597717.2 mRNA upstream 25813 65510598 ~ 65512345 (-) True hsd3b1
XM_021597718.2 mRNA upstream 35429 65520214 ~ 65535136 (-) False LOC110520412
TU325443 other downstream 32857 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 179723 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 244232 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 404155 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 424929 65054700 ~ 65055211 (-) False G286638
TU325523 other upstream 95006 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1357886 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2142047 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2398967 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2721805 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile


XM_021597709.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021597709.2 Expression in each Bioproject

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XM_021597709.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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