RNA id: XM_021597716.2


Basic Information

Item Value
RNA id XM_021597716.2
length 597
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110520411
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65489157 ~ 65491432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCAGCTTGGAAATTAAAACTACATGTCCCAGAAACGTAGCGCAGCCATTTAAAGACATGCCTGGTTCAACCATGTTGTATAAGGAAGGACAGAGTAGGACATACGTGAATCGGAGTCGCTGTGCAAGAGGGCTTACCAGCTAGTTAACCAGAAAAATGTCCACCGTATCTGCTGCCAGCGTCGAGCCCGTTGCAATTGAGGGCACGGAGAAGAAACCAATGAAACCCTGTTGTGCGTGCCCAGAGACGAAGAAAGTTAGGGATGCGTGCATCATTGAGAAGGGCGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGAtttaatataactttatataaTGAGTCATTGTGTTGTTGCTGGCTGGCTGTCTTATAAAGGGACCTGGGATATTCCTCGTGTTTTTATTTATACCTCAACATGAAAGGAAGATGTGATCGCTGCACAGATGGTCATGATGGAAGATATGTTCCACTGAGTGATGTGTTTTTTAATGCTCTGAATTTCAGAATTATGTGAATGTTGTTCTGCTGATTTGAGTGACATAAATATCCTATGCAATTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325234 lncRNA upstream 6946 65481281 ~ 65482260 (+) True G286869
TU325212 lncRNA upstream 34865 65453705 ~ 65454341 (+) True G286849
TU325206 lncRNA upstream 44652 65444312 ~ 65444554 (+) True G286843
TU325181 lncRNA upstream 78289 65407736 ~ 65410917 (+) True G286824
TU325073 lncRNA upstream 94421 65394376 ~ 65394785 (+) True G286726
TU325240 lncRNA downstream 16611 65507678 ~ 65508356 (+) True G286875
TU325249 lncRNA downstream 19540 65510607 ~ 65512345 (+) True G286882
TU325245 lncRNA downstream 42535 65533602 ~ 65534662 (+) True G286879
TU325496 lncRNA downstream 67011 65558078 ~ 65558292 (+) True G287085
TU325504 lncRNA downstream 73602 65564669 ~ 65564900 (+) True G287093
XM_036974937.1 mRNA upstream 102500 65362736 ~ 65386706 (+) False ift88
XM_036974939.1 mRNA upstream 102500 65362736 ~ 65386706 (+) False ift88
XM_036974940.1 mRNA upstream 102500 65362736 ~ 65386706 (+) False ift88
XM_036974941.1 mRNA upstream 102500 65362736 ~ 65386706 (+) False ift88
XM_036974942.1 mRNA upstream 102500 65362736 ~ 65386706 (+) False ift88
XM_036974952.1 mRNA downstream 892 65491959 ~ 65503791 (+) False popdc2
XM_021597715.2 mRNA downstream 1081 65492148 ~ 65503791 (+) True popdc2
XM_021597724.2 mRNA downstream 91968 65583035 ~ 65599863 (+) False wars2
XM_021597723.2 mRNA downstream 92003 65583070 ~ 65599863 (+) True wars2
XM_036974958.1 mRNA downstream 123118 65614185 ~ 65637086 (+) False LOC110520416
TU325080 other upstream 203650 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 322626 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 379569 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1181846 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1405224 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 543353 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1058755 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 1240219 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1292306 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1502104 66993171 ~ 66994131 (+) True G288674

Expression Profile