RNA id: XM_021597718.2



Basic Information


Item Value
RNA id XM_021597718.2
length 3346
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110520412
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65520214 ~ 65535280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgcCGGAAGAAGGCCGTCCGGTTAGGGAGAACCTGTTGAAAATAATCACTTCAAGGAACCTTTCACAGAGGGGCAGCAGGACATCCAGCAAGACACCAACTGAGATGGGgggcagtggagaggagaaggagagtgtgcAGGGGAGGTTTCACAGGAGACTGTCTCGTCTGGGGAGCAGAGGCTCTATTAGAGATCCACCCAGACCTCCACCCCAACCTGTCCAACCCTCAGCCACATCTCCGCCCCTAGCCCcggccccagctccagccccggCCACAGTTGAAAGTCCCACTCCCCCAGCAGCGAAACCTCCAACCCCTACAGCCCCAGCCCCTAAACCCTTGGAGCTTCCCCCGAAACCCACTGATATAAGCCTGAAGCCAAGCCTCCCTCCAAGGCCTCTAACCAGGTGGTTCAGCAGCAATGAGCATGGCACCACAGTCCTACAGGGGTTTGAGTTGTTCCGTGGTGATGAGACTCTGTGTGATGTCATCCTGGTGCCTGGGGACAGCAGTGACACCTTCCCCGTGCACAGAGTCATTATGGCCTCTGCCAGCAACTACTTCAAAGCCATGTTCACTGgGGGTATGAGAGAACAGGATATGAGGGAGATTAAGCTCCATGGGGTGAGTAAAACAGGTCTGAAGAACATCATAGAGTTCATCTACACATCCCGGCTGAGTCTGAGCATGACCAACCTGCAGGACACTCTGGAGGCTGCCAACTTCCTCCAGGTCCTCCCCGTCCTCGGCTTCTGCAACAAGCTGCTCAGCACTGAGATCACCATTGATAACTGTATGGAGGTGGAGCGCATCGCCGGGGACCTGCTCCTGGAGGATGTACAGGCCCACATTGGGAAGTTTGTATGTCAGAACCTGTCAGCATTGCTACAGTCTGGCCACTACCTGCAGCTCTCTCAGCCCAGCCTGGCCAACGCCCTGGCCAGCGACAGCCTCAAGGGCTTCTCTGAGATGGAGCTGTACCGCATCGCCCGCTCCTGGCTGGACCACGACCCCCCCACTCGCCGCTCCGCCGCCTACTCCCTGATGAGCCAGGTCCGCTTCCCCCTCATGACCCCCACTGAGCTGCTCGAGATCTCCCAGGAGGATGAGGGGCACGATGATGGCGGAGCGGCCATGATGCGCTCGGACACGGCCTGCGTCAACCTCCTGCTAGAGGCCAGCAACTACCAGATGATGCCCTTCCTCCAGCCTTCCTTACAGACGGAGCGCACACGCATCCGGTCGGACGCCAAACACCTGCTGGCGCTGGGCGGGGTGATGAAGCAGCAGCTGGTGGTGAGCAGGGAGCTGAGACTGTATGATGAGGAGATCGGCCATTGGAGGGCGCTGAGGCCTATGGAGGTTCCCCGCTACCAGCACGGCGTTGCCCTGCTCGGGGGCTTTCTCTACATCGTAGGCGGCCAGAGCACCTACGACACCAAGGGCAAGACGGCGGTGGACAGCGCCTACCTCTACGACCCGCGCTTCGACCGGTGGTTGCAGGTGGCCTCGCTCAATGAGAAGAGAACCTTCTTCCACCTGAGCACCCTGAAAGGGAAGCTGTATGCTGTTGGGGGCCGGAACGCCTCAGGAGAGATTGACACCATGGAGTGCTACAACCTTAGAAGAAATGAGTGGACATTCGTGTCTCCCATGGTCGACCCCCACTACGGGCATGCTGGGACAGTCCATGGTGACCTGATGTATGTCTCAGGCGGAATCACAGGGGACACGTTCCAGAAGGAGCTGTTGTGTTATGACCCTGAGACTGACGCATGGAGTCGCCGTGCCGACATGATGGAACTGCGTGGCCTACACTGCATGTGCACAGTGGGCGATCGGCTCTATGTGATGGGAGGGAACCACTTCCGGGGCAGCAGCGACTATGATGACGTACTTAACTGTGAATTCTACAGCCCTGAGGTGGACCAGTGGACGGTGGTGGCGGCCATGCCACGAGGCCAGAGTGATGTAGGGGTGGCCGTGCTTCAGGGCCAGATCTACGTGGTTGGGGGCTACTCCTGGAACAGCCGCTGCATGGTGGACATCGTGCAGCGCTACGACCCAGAGAAGGACGAGTGGGACCGGGTGTTCAATGTGCTGGAACCCCTGGGCGGCATCCGGGCCTGCACCATGACTGTGCATCTGCCTGAGGGTGCCGTGGACGACGGCCAGATGCAGGAGTGCCCGCTGGACACTGCCAAGAACTGAAAGCTGAGATCAAGAACATATAGATTTAGCTTCTCTGTGTTTGAGATGCTGGAAAGTGTGACTTTTTTGTGGGAGAAGTGGAAAATGTGCAGTAGAATCTCTCGAATAGGTCCCACAAGGGGTTGGAACTGGTTCAGGAAACACAACAGAAAACCGgaaaataacaaaacatttcaaaGAACAGAATTGGAACCGGGAATGAAAGTGATCCATACTGTTCCGGAACTGAAccgttatttttttaaatgcatggcaaccggttaataacgttattttactttcctggcattttttttttttgtcccacAAAAAAATGCAACAAAGTATCTATGGAAAGCCCTCACTCTGCCGCTCTACACACACGAGTTTGTTATCTAACTAGCTCAAGCTTGTTAGCAAGCTAGCTCAAAGGACAGTCAGTTTCTCCATACAAGCCGCTACTcataggtataattctgtggacctaattcagataatgcatgtcataacaagatgcccagatcttcaagcctcctcctcaaccctctctccccaccagTAAAATATCAGTTGCATCTTCCGTTATAGGCTACATTTCTGTCCATCACGCATGTAAACAACTAGTTTGCCTGTTCTATccacactgattggtgaagtaatttaatgagctaaatgtaaaaaaaaaaaacggttgaTTTCACAGGTTAAAAAAGAAACaggggcactgcattgcagtgctagctgtgccaccagagactctgggttcgagcccaggctctgtcgcagccggccgcaacctggaggtccatggggcgatacacaattggcctagcgtcgtccgcgctagggagggtttggccagtagggatatccttgtcccatcgcgcactagaaactcctgtggcgggccgtgcgcagtgcacgctagccaggtcgccaggtgcacggtgtttcctccgacacattggtgagactggcttccgggttggatgcgcgctgtgttaagaagcagtgcggcttggttgggttgtgttttggaggacccatggctttcgaccttcgtctctcccgagcccgtacgggggttgtagcgatgagacaagatcttAACTACTAACAATTGTATACCACgaaaattggagagaaaaggggg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU325444 lncRNA downstream 71797 65448068 ~ 65448417 (-) True G287043
TU325442 lncRNA downstream 73912 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 180319 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 215716 65290732 ~ 65304498 (-) True G286979
TU325492 lncRNA upstream 19394 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 21291 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 32884 65568020 ~ 65568248 (-) True G287097
TU325521 lncRNA upstream 44136 65579272 ~ 65579563 (-) True G287110
TU325631 lncRNA upstream 123517 65658653 ~ 65658911 (-) True G287206
XM_021597717.2 mRNA downstream 7869 65510598 ~ 65512345 (-) True hsd3b1
XR_002472975.2 mRNA downstream 11830 65503985 ~ 65508384 (-) False pla1a
XM_021597713.2 mRNA downstream 11830 65503988 ~ 65508384 (-) True pla1a
XR_005039939.1 mRNA downstream 33413 65485884 ~ 65486801 (-) True LOC118944602
XM_021597709.2 mRNA downstream 35429 65480140 ~ 65484785 (-) True hcn5
XM_036974955.1 mRNA upstream 678 65535814 ~ 65548205 (-) False LOC110520413
XM_036974956.1 mRNA upstream 678 65535814 ~ 65549337 (-) False LOC110520413
XM_021597720.2 mRNA upstream 678 65535814 ~ 65549415 (-) False LOC110520413
XM_021597721.2 mRNA upstream 678 65535814 ~ 65549415 (-) False LOC110520413
XM_021597722.2 mRNA upstream 678 65535814 ~ 65549415 (-) True LOC110520413
TU325443 other downstream 72931 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 219797 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 284306 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 444229 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 465003 65054700 ~ 65055211 (-) False G286638
TU325523 other upstream 44655 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1307535 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2091696 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2348616 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2671454 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile


XM_021597718.2 Expression in all Baseline Samples

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XM_021597718.2 Expression in each Bioproject

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XM_021597718.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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