RNA id: XR_005051355.1


Basic Information

Item Value
RNA id XR_005051355.1
length 3847
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110520416
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65614185 ~ 65637086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTATCCAGAAGTGAGTATCAATCAGAGAGCGGGGAGAAGGACAAaaagagaagaaggaagaggcAGAAAAGCAGGACGGAGAGACAAAAGCGATAGATAACATTACTTTCGAGCAATCAAACGCGCCGTAGAGATGGCATATCATATTGTTAGAGGTTTGAAACATCATTTATAGTCATAGTTTTTGGATTACTTTCGTCATTGTCGACTTTTTGCACTGTTGTAAACATTGACGTGCGCATTTTCCTTGTGCTCACTGCTTGGACGGAGTTTTTGTTTTCCTTCTTGTGGATTTGCCTTGGGAGAAATGAGTGACAGGAGGCGATCTGCCGCTGCTCTGAGCTCGAGAGCGCACGCCTTTTCGGTGGAAGCCCTGATCGGGTCAAACAAGAAGAGAAAGCTCCGCGCCTGGGAGGAAAAGGAGCTGGAGTTGTCTATGGAGAGCCTCGCCACCAACGGACAATTAGGAGACGGCGACGACCCTGCACATTGTCTAGATATCGACCCCGATTCGGAGGCGAGCCCCGGATCAGACGGTGAGGGTTTGGCGGAGAGGACGTCGTGCTCCTTCGGCTCCCCCGCGGACCTGGCCCCGGCGGCCTGCGAGCCGTCTCCCGCTGCCTCCATGGAGGAGATTCAGGTGGAGCTGCAGTGCGCAGACCTCTGGAAGCGCTTCCATGAAATTGGCACGGAGATGATCATCACTAAAGCGGGGAGGCGGATGTTCCCTGCAATGAGAGTAAAGATCGTGGGTCTTGACCCCCATCAGCAGTATTACATAGCCATGGACATTGTTCCTGTGGACAATAAGAGATACAGgTATGTGTACCACAGCTCCAAGTGGATGGTGGCGGGGAACGCGGACTCCCCCGTGCCCCCGCGGGTCTACATCCACCCAGACTCCCTGGCCTCTGGAGACACCTGGATGAGGCAGGTGGTCAGCTTCGACAAACTCAAACTCACCAACAATGAGCTGGATGACCAGGGCCATGTGAGTGAGCCGATCATCCTCCACTCCATGCATAAGTACCAGCCTCGTGTCCATGTGATCAGGAAGGACTTCAGCAGTGACTTGTCCCCCACCAAGCCTGTTCCCAGCGGAGAGGGAGTGAAGACCTTCAGTTTCCCTGAGACTGTCTTCACCACTGTCACCGCCTACCAGAACCAacagATAACAAGACTAAAGATCGACCGCAACCCATTCGCTAAAGGATTTCGGGATTCAGGCAGAAACAGtctctcgttctctctctcacacaggacTGGTCTGGAGGCGATCATGGAGACCTATGCATTCTGGAGACCGCCTGTGAGGACACTCACATTTGAGGACTTCACCAACATGCAGAAACAGCAAGGAGGAAGCACGGGCACCTCTCCCACCACCTCCAGCACAGGAACCCCCTCCCCTTCTGGTGCAGCCcacctcctgtccccctcctgctCACCGCCTACCTTCCACCTGGCCCCCAACACCTTCAATGTGGGCTGCAGGGAGAGCCAGCTGTGCAGCATGGGGTTGTCTGAGTACCCGGCCTGCGCCCGCAGCAACATGGCGGCCCTACAGGGCTACGGGGGCCTGGCTGACAGCTCCTACGGACGCCTCCAGTCAGCAGGGGGCACTGTGGCCTCCACCCAGCAGTCTGAATCCTTCCTGCCCCAGAGAACTTCCTCCCTGATTGCTGCGGGAATGCAGGGGGGCGGCCATGGCTCTCTGTCCAGTGGCAGCAGTGGAAGTGCTGGCGGAAAGATGGATGCCTATGGAGGTCAGTTGACCTCGTTCCCGGCCTCCCAGCTGCAGTATGTGATGCAGGCGGGCTCTAGCTCCGCTTCTGGCTCTTCCTCCTCTGGCTCTTCCCCCTCATCCGCCCACATGTTCAGCGGGGGCCACCACCATGTGCAACAGGGGTCCTACAACGCCTTCTCTCTCCACAACCCTTACAACCTGTATGGATACAACTTCCCCACCTCCCCTCGTCTGGCTACCAGCCCCGAGAAGCCTCAGGGCGGCCTCCTGTGTTCCTCTTCCCCTGCCGGGGCATTTGCCGAGCGCCAGTACCTGTCCAACGGTGGCATGGACAGCATGCACATGATCGGCAATCCCTCCACTGGCCAGCAGGGGGCAGGCTCCTGTGATGGCCGGCAGTATGGCTCCTCCTCTCAAATGTCTATGCACATCGTATAAAAACTAGGATCTCACTTCTGACCCATTTTCGCTGTCCCATTATTTCAACAAGTTATGTTTCTTCTACGATAAATCTGTTATCTCAGATGTGCTATTGATGTTGAGTCATTTTACGTTTAGCGTTTGTAATACTGAGGTAGTGTACAAAGTTAACCTTTCAAAAAAATGCCTTTTCATCTCATGATGCTTGTTGTTTTGAATTTCCCCCCAACAAGCTTTATTCAACGGAATGAAACTGTTATTTAATTGCCACAATAGTGTTAAAAAGGCAAAGTGAAACCGTATACCTGACTCTCTCAGTAACTGTTCAGAACACTAACCCCATTATTGGGGACACACAGAGGGATCCGTGAAGGAGAGGGGCCCATATACTCTTACTGTGCAGGGATTCTCAGGAGTGAACCCATGAATTTGTTATGGTGCAATAGTAATGACAGCCTCTACAGTAACTCAGCCTTGTTGCTATGGATTATAACCAGCCCCGGACATGATGTGACAGGGGCTTTGTGAGATCCAGAAACTTCCCCTCCACTTCTACATCTCTAGTTGTAACAGGACAGTTATGCAACATTATAGCATTGTGGCAACATTGGGAGAGAACTGAAAGGGTTGTGGATATTAACAGTGCCTGATCAATATGGTTTTCCCTCTGGTCACTCAGAGGTGATGAAGGGAGGATGATGGATGGACAAAGGGTgaacataatataatacagcaCATACTCGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTTAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGACGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTTAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAAGTCAAAGACCTACAGGTCAGGGTGAGGGATGAACTATGTGTGTCCGACAGGGGCCCAGTTGTTGGCCCTGCATCTCTCAGTGGACATGCTGGATGAGAGGCTCTGTTCAAGGGGACACTGAATATACAGTGAAATCACCACAATCTTATCAATTCCTTTCCTCACAGACTGGAATGGCTTCACAATTTTGAGTGGATTACCTTTTAAAAAGCATATATAAGATGGTGAATGCAAGTAAAAACCATACGCTTTCAAAATTGTTGTGTGAAATGTTTTAAATATACAATAGGAGAACAGAGTAATTAAAGTATGTTTTGGTGTGTTGTAGATAAGCGTATTTAAGTGCCAAGCAATAATCCTATTATATTGGCCAATCTATCATGAAGACAAATGTGTGGAAAAAAGGGAAATatcaaaaatattctttagaaaggCATTCAAAAAAAATGTACATACAGGTGCCAAGCACAGTAATGTTCAATAAACATTTGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325545 lncRNA upstream 2880 65611018 ~ 65611305 (+) True G287133
TU325506 lncRNA upstream 46410 65567475 ~ 65567775 (+) True G287095
TU325504 lncRNA upstream 49285 65564669 ~ 65564900 (+) True G287093
TU325496 lncRNA upstream 55893 65558078 ~ 65558292 (+) True G287085
TU325245 lncRNA upstream 79523 65533602 ~ 65534662 (+) True G286879
TU325640 lncRNA downstream 39022 65676108 ~ 65676375 (+) True G287215
TU325708 lncRNA downstream 88811 65725897 ~ 65726577 (+) True G287281
TU325724 lncRNA downstream 101640 65738726 ~ 65738959 (+) True G287295
TU325726 lncRNA downstream 102693 65739779 ~ 65740008 (+) True G287297
TU325729 lncRNA downstream 107936 65745022 ~ 65745346 (+) True G287300
XM_021597724.2 mRNA upstream 14322 65583035 ~ 65599863 (+) False wars2
XM_021597723.2 mRNA upstream 14322 65583070 ~ 65599863 (+) True wars2
XM_036974952.1 mRNA upstream 110394 65491959 ~ 65503791 (+) False popdc2
XM_021597715.2 mRNA upstream 110394 65492148 ~ 65503791 (+) True popdc2
XM_021597716.2 mRNA upstream 123118 65489206 ~ 65491067 (+) False LOC110520411
XM_021597727.2 mRNA downstream 140110 65777196 ~ 65813495 (+) True LOC110520417
XM_036974967.1 mRNA downstream 390547 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 390547 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 390547 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 390547 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 328629 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 447605 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 504548 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1306825 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1530203 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 397334 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 912736 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 1094200 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1146287 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1356085 66993171 ~ 66994131 (+) True G288674

Expression Profile