Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU325570 |
| length | 1384 |
| lncRNA type | sense_over |
| GC content | 0.42 |
| exon number | 2 |
| gene id | LOC110520416 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 65614185 ~ 65637086 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU325545 | lncRNA | upstream | 24075 | 65611018 ~ 65611305 (+) | True | G287133 |
| TU325506 | lncRNA | upstream | 67605 | 65567475 ~ 65567775 (+) | True | G287095 |
| TU325504 | lncRNA | upstream | 70480 | 65564669 ~ 65564900 (+) | True | G287093 |
| TU325496 | lncRNA | upstream | 77088 | 65558078 ~ 65558292 (+) | True | G287085 |
| TU325245 | lncRNA | upstream | 100718 | 65533602 ~ 65534662 (+) | True | G286879 |
| TU325640 | lncRNA | downstream | 39114 | 65676108 ~ 65676375 (+) | True | G287215 |
| TU325708 | lncRNA | downstream | 88903 | 65725897 ~ 65726577 (+) | True | G287281 |
| TU325724 | lncRNA | downstream | 101732 | 65738726 ~ 65738959 (+) | True | G287295 |
| TU325726 | lncRNA | downstream | 102785 | 65739779 ~ 65740008 (+) | True | G287297 |
| TU325729 | lncRNA | downstream | 108028 | 65745022 ~ 65745346 (+) | True | G287300 |
| XM_021597724.2 | mRNA | upstream | 35517 | 65583035 ~ 65599863 (+) | False | wars2 |
| XM_021597723.2 | mRNA | upstream | 35517 | 65583070 ~ 65599863 (+) | True | wars2 |
| XM_036974952.1 | mRNA | upstream | 131589 | 65491959 ~ 65503791 (+) | False | popdc2 |
| XM_021597715.2 | mRNA | upstream | 131589 | 65492148 ~ 65503791 (+) | True | popdc2 |
| XM_021597716.2 | mRNA | upstream | 144313 | 65489206 ~ 65491067 (+) | False | LOC110520411 |
| XM_021597727.2 | mRNA | downstream | 140202 | 65777196 ~ 65813495 (+) | True | LOC110520417 |
| XM_036974967.1 | mRNA | downstream | 390639 | 66027633 ~ 66036299 (+) | False | LOC118964312 |
| XM_036974968.1 | mRNA | downstream | 390639 | 66027633 ~ 66036299 (+) | False | LOC118964312 |
| XM_036974969.1 | mRNA | downstream | 390639 | 66027633 ~ 66036299 (+) | False | LOC118964312 |
| XM_036974971.1 | mRNA | downstream | 390639 | 66027633 ~ 66036299 (+) | False | LOC118964312 |
| TU325080 | other | upstream | 349824 | 65260445 ~ 65285556 (+) | True | zmym2 |
| TU325057 | other | upstream | 468800 | 65161391 ~ 65166580 (+) | True | LOC110520396 |
| TU325026 | other | upstream | 525743 | 65109256 ~ 65109637 (+) | True | G286679 |
| TU324010 | other | upstream | 1328020 | 64306512 ~ 64307360 (+) | True | G285763 |
| TU323408 | other | upstream | 1551398 | 64071432 ~ 64083982 (+) | True | G285203 |
| TU325972 | other | downstream | 397426 | 66034420 ~ 66036202 (+) | True | LOC118964312 |
| TU326785 | other | downstream | 912828 | 66549822 ~ 66550487 (+) | True | G288252 |
| TU326969 | other | downstream | 1094292 | 66731286 ~ 66733797 (+) | False | G288430 |
| TU327020 | other | downstream | 1146379 | 66783373 ~ 66784786 (+) | True | LOC110505407 |
| TU327305 | other | downstream | 1356177 | 66993171 ~ 66994131 (+) | True | G288674 |
