RNA id: XM_036965082.1


Basic Information

Item Value
RNA id XM_036965082.1
length 834
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110504464
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65696578 ~ 65697411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATgaatgacccagcctgcaaggGAACCGTGGATAGAAATGTGACTCCACCGGTCTTGAGGTTTGAATTACCCCTCAACACGACCAATTCTTGTGGCAGCCTCTTCAGGACAACCAGCGCTCCAGGCATAGGGATATTTTCTGACTTCTCCAACATCCAGACAGTCAACATCAGCGGGGTGGTCCGATCATATGATCCCACCACAGGGACAGTCACTTACAACACTGAGTTGAAGTATTATTACTCCTGTGCCTATCCCCTAGAGTACCTGATCAACAACACCCTAATTGATGTGTCAGCATCCTCCATTGCAGTGAAGGACAACAATGGTAGTTTCATCAGCACTTTGAGCATGAATCTCTTCAGTGATGTCAATTTCACTTTACCCTTGGTCATTCCAGAACAGGGTCTTGACTTGAGGACGGAAGTCTTTGCGCAAGTCAAGGCCACCAACCTGACCTCCCAGTACAATGTGCTCCTGGACCGATGCTACGCCTCCATTTCTCCTCTACCCACTAACTCCACTTTCTTCAACCTGTTTGTCCTTTGCAACACTGACCTACTAACCGTCATCCATGAGAATGGAAAGAGTCAACGCTCCCGTTTCTCCTTCCCGGCCTTCCGCTTCATGAAGCAGCAGAATGAGATGAAGTCCACCTACTTCCTCCACTGCATCACCCGTCTTTGTGAGAAGAGCACCTGCAGTACGTTCATGCAATGTAACAGCAGGAGGAGAAGGGGTGTTGTTCCTGCTACCGAAGATGCAGCAGAGTCCAAAACCATCAGTTCCCCTCTTATCACCATCAGAGCAGAGAGCATTGTGGCATTAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325632 lncRNA downstream 36150 65660207 ~ 65660428 (-) True G287207
TU325631 lncRNA downstream 37667 65658653 ~ 65658911 (-) True G287206
TU325521 lncRNA downstream 117015 65579272 ~ 65579563 (-) True G287110
TU325508 lncRNA downstream 128330 65568020 ~ 65568248 (-) True G287097
TU325494 lncRNA downstream 139920 65556427 ~ 65556658 (-) True G287083
TU325715 lncRNA upstream 34380 65731791 ~ 65732036 (-) True G287287
TU325737 lncRNA upstream 58419 65755830 ~ 65756032 (-) True G287308
TU325740 lncRNA upstream 60182 65757593 ~ 65757817 (-) True G287311
TU325760 lncRNA upstream 70584 65767995 ~ 65768205 (-) True G287331
TU326009 lncRNA upstream 72190 65769601 ~ 65771898 (-) True LOC110504474
XM_021597720.2 mRNA downstream 147163 65535814 ~ 65549415 (-) False LOC110520413
XM_021597721.2 mRNA downstream 147163 65535814 ~ 65549415 (-) False LOC110520413
XM_021597722.2 mRNA downstream 147163 65535814 ~ 65549415 (-) True LOC110520413
XM_036974956.1 mRNA downstream 147241 65535814 ~ 65549337 (-) False LOC110520413
XM_036974955.1 mRNA downstream 148373 65535814 ~ 65548205 (-) False LOC110520413
XM_036965090.1 mRNA upstream 12193 65709604 ~ 65710566 (-) True LOC110505400
LOC110504474 mRNA upstream 71903 65769314 ~ 65777312 (-) False LOC110504474
XM_036974962.1 mRNA upstream 124044 65821455 ~ 65827125 (-) False LOC110520418
XM_021597728.2 mRNA upstream 124044 65821455 ~ 65827337 (-) False LOC110520418
XM_036974964.1 mRNA upstream 124044 65821455 ~ 65840478 (-) False LOC110520418
TU325523 other downstream 116083 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 249295 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 396161 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 460670 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 620593 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 1145260 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1929421 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2186341 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2509179 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2881692 68579103 ~ 68580707 (-) True G290542

Expression Profile