RNA id: XM_021597727.2


Basic Information

Item Value
RNA id XM_021597727.2
length 2961
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110520417
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65777196 ~ 65813495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGAAAATGCTCTCGAGGATTTACTTACCGATAGCTGCAATTCTAATAGGTCCTCTGAATGCTGTACTATGCGTTTTACACAAATATTGGGATTTATTGTACATCCCTGGGCATTATTCCGGAAGGGATTGTTATGCGTGTTTGGGTTCTTTGTAGTGAATCAGCTGATCAGGTACTCGCCTAACTATAGTAAACGTGACTGTGCGATGGGAATTGGCTTGATCAAATCAAGTTTTGCCATGTTTGTGATCATAACAAAATCATGAAGACTCCCTGCATTCGATGCTTTTTGTAATTCAGTCCTGCTCGGAGTAGACAACATATTCGTGGACGAAGGAAAACGGTGGGGAGCATTGAGGTGTAGGCCAGCGAAGTGCAGGAATGGATCCTCTGGGAGCACGCTCTCAGTTTGTGGAGGTACAGACTCTGTCCACCTGGGAGCGGCAGCCAGACTCtgagggagaagagacagagaaggagtaTACCGACAGCCTGGTCAGCCAGGAGGCCTTCCCCTCCCCTTTTCCCTACAGAGAGGACATCAACAGGAAGATCGTGCTCTATAATGGCGACGTGGCCCTGCTGAACTGCACAGCGATTGTCAACACGAGTAACGAGACTCTGACGGACAAAAACCCCATCTCTGAGAGCATCCTCTTACACGCTGGGCCTGAGCTTCGAGATGAGCTGCTCAAACTGAACGGATGTCGGACAGGCGAGGCGAAAATGACCAAAGGCTTTAACCTGGCGGCACGCTTTATCATCCACACGGTGGGCCCCAAGTACAAAGCCAAGTACAGGACGGCTGCTGAGAGCTCACTGTACAGCTGCTATAGGAACGTCATGCAGCTCGCCAAAGAGCAGGCCATGGCATCTGTGGCCTTCTGTGTGGTAAGCACAACTAAGAGAGGATACGCACTAGAGGACGCCACACACATCGCCTTCAGAACGGTCCGCAGGTTTCTCGAGAACCATGGAAAGAGCATAGAGATGGTGGTGTTCGCTGTGACGGATACGGAAGAGCCTACATACAGGAAGCTGCTTCCTCTCTACTACCCTCGTTCTGAGGAAGAGGAGCGCGCCAGCCTGCCCCTAATCCCTGCCGACATTGGCAACTCGGAGGGTGAGCCTGTCGTCCCAGAGAGACAGATCCGCATCGCTGAGAAACCAGGCAGTCTGGAAGATGACTGTGAGGAGGAGACTCTGGACTCAGACCTGGGCCAGGTGGGGAATCATGCGTTTGCCCGGATGGAGGGAGATGTGGACAAACAGCGCAAACTCATCCTGCAGGGCCAGCTGTCTGACGCAACCATTCACAAACAGCACCAGAGAAATTATAACCGTTGGTTATGTCGAGCCAGGGCAGAGGACTTGTCTGACATAGCAGCACTGAAAGCCTTATATCAAACTGGTGTTGATATGTGTGGCAGGACGGTGATGGTTCTTGTTGGCAGAAATATTCCTGTGACCCTCATCGACATGGAAAAGGCCCTGCTGTACTTCATCCATGTCATGGACCACATCACAGTGAAGGAGTATGCAATGGTTTACTTCCACACTCTGACCGGAGAACACAACCATCTGGACTCTGAATTCCTTAAGAAGCTCTACGAGATTGTAGATGCCAAGTTTAAGAAGAACTTGAGGGCTTTCTACTTTGTACACCCCTCGTTTCGCTCCAAGGTGTCCACCTGGTTCTTCACAAGATTCACTGTGTCAGGGATGAAAGAGAAAGTCCATCATGTAGAGACCCTCCAGCAGCTCTTCACCTGTATTCTGCCTGAACAGATAGACATCCCCCCCTTCATCCTGGAGTACGACGCACGGGTGAATGGGGCTTACCGCCCCGCCCACTCCTCCAGCCTATGAATGGACCAATCAGAACTCTGACTGAGATCAAAGGCCAAGGACTATTTTAGACTCACTTCATCTACAGTCACATAACTGGCTCCACTTCCTGGTTCTGACCAGCAGGAACTCTGTGGTTTAGCTCCTTTACCAGATTATAAGCCACCCAGGACCTCAGTGGGCCTAGGTGGACTTTTGAGTTGATTTTGCTCTGCCTGGGACCTCACAAGGACAGTATGATGGACGATGACACTCTCTGAGAAGCCTGGATACTAATGAACCTAGGATTGTTTTTTATTAGCAGTGCGATACAATCAGATGACAGACAGACGAATGGGTTTCTCTGTGACGGAGCCTGTGTGAACTCGCCAACCTATCCCAGGACACACTGGTGGCCTGTCTTAAaatcctgcctgtgtgtgtgagaacgcGGAGAGACATCACTCAtgtttcaaatgttttatttttgcaCAACTTCACCAAATGGTAGGTGGAAGGTTGTGTTCACAATCACAAGCTGCTTAATTGTGAAGTTGTTTTTAGGTGTCCCAGAACCTAGTGTCCACACTATCCCTTTCCATCTACTCTGTTTCTTATTTAACGCACACAGTTGAAATCATTTATCAAGTTTATGGAAACTAGAATGTGCCTCACATGAAACACAATGATTCCGTAAACATAATTATACTACATTCAAACCTACTGCTTTTTTCTGAATACCAAATCAACTTTGTGTTAGCCATGCAGTCAGATTCTTCATATGTATGTTAACTTGATTTCTCCTTTGTTATCTACTCTGTTTATATTGTGCTATTATTTCAATGTATACCAGCTTTGCGCTTCTGTCATTGAACGCACACGCTTTCCTGAGACATGTTAGTGAATAAAAGACTGTATTGAGAGCCACACATTGTATAGGCTATACAGTAGTTCATGGTTGACTATCAGCTGAAGTTAATCTTGTTTTAGTGGCCCATAGAGAAAGGATGTAGTCATCTGAGATTTGAGCTGCGTCTCGATACATTCTGTCTCAATACATTCTTTGCCAAGATGTAGAGTTTTTAATTTTCAGGTAAAGATGTGAAAATAAACATTGTGATTTCTGCTGTT

Function

GO: NA

KEGG:

id description
K24997 GDAP2; ganglioside-induced differentiation-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325763 lncRNA upstream 7635 65769192 ~ 65769561 (+) True G287334
TU325738 lncRNA upstream 20659 65756337 ~ 65756537 (+) True G287309
TU325729 lncRNA upstream 31850 65745022 ~ 65745346 (+) True G287300
TU325726 lncRNA upstream 37188 65739779 ~ 65740008 (+) True G287297
TU325724 lncRNA upstream 38237 65738726 ~ 65738959 (+) True G287295
TU325813 lncRNA downstream 47030 65860525 ~ 65861536 (+) True G287383
TU325913 lncRNA downstream 145691 65959186 ~ 66022656 (+) True G287470
TU325956 lncRNA downstream 210948 66024443 ~ 66024967 (+) True G287513
TU325961 lncRNA downstream 220925 66034420 ~ 66036202 (+) False LOC118964312
TU325963 lncRNA downstream 220925 66034420 ~ 66036202 (+) False LOC118964312
XM_036974958.1 mRNA upstream 140110 65614185 ~ 65637086 (+) False LOC110520416
XM_036974959.1 mRNA upstream 140110 65614185 ~ 65637086 (+) False LOC110520416
XM_036974960.1 mRNA upstream 140110 65614185 ~ 65637086 (+) False LOC110520416
XM_036974961.1 mRNA upstream 140110 65614185 ~ 65637086 (+) False LOC110520416
XR_005051355.1 mRNA upstream 140110 65614185 ~ 65637086 (+) False LOC110520416
XM_036974967.1 mRNA downstream 214138 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 214138 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 214138 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 214138 66027633 ~ 66036299 (+) False LOC118964312
XM_036974972.1 mRNA downstream 214138 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 491640 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 610616 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 667559 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1469836 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1693214 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 220925 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 736327 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 917791 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 969878 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1179676 66993171 ~ 66994131 (+) True G288674

Expression Profile