RNA id: XR_005051356.1


Basic Information

Item Value
RNA id XR_005051356.1
length 2205
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110520422
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65978825 ~ 65984444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaagGCTATCTTTTCGTTGTAggtaatcaggcctaccgctgttgtgtcgtcagcaaacttcgtgattgagttggagacgtgcgtggccacgcagtcctgggtgaacatggattacaggagggggctgagcatgcaccccagtggggcccccgtgttgaagaTCAGTCAATGGTCTACGCTCCTATGGAGCCAAGGGCTTAAGCCAACTTGATAGTCAGTATCTTCGTAACTGCTGGACTCATCATTCTCATCTTGTCTGTGTCATTTTCAGGTCAGGGCTTAGGGGGTTCCAAGGGCACTGTGGATAGCATTGACAAGTGGCCCATCGGGTACTTGGGAGAGGATGTCATCTTGAGCTGCAAGTTCAAGACTTCCACTAACAGCAGGGAATCGACCAGTCAGGTGTCAATCACCTGGACGAAGGAGGGGCTAAGTGAAGTGGTGTACAAGTATGATAAAGGCGCAGTCCAGCTGACGGAGCAAAACCCCCAGTTTAAAAATAGAACCCTGCTGTTCTCAGATGCCATAGGTGGAGGCAATGCCTCCCTGTTGCTGAGGGACATAAAAGTGGGAGACAATGGGGTGTACTACTGCAGTGTGAGCACTCCTAGTTGCTCGGGAAATGCCAGTGTTAACCTCAGAGCTGCAGCTTTCTCAGCCCCCAAATTCAAGCGGGTAAACTCTACCCTAAcggcagaggcagagagatggTTCCCCAAACCAAACATCACCTGGTTGGACGTCAATGACAACGTCCTGAACGAGAGTGAAACTAGCTTCTTCAACAACTCCGCCGGGATAACTCGATTCATCAGCTCCCTtcagccaatcaaattgtatgGCAGCTACACCTGCATCATCCAAAACCCTCTGGTGAAGGCTATCTCCCAGGCAACCATCAAAGGTCCAGTAAACACCTTTCAgagaaaatacaattttatactGAGAAAATACTTGGATGAGAACTGCATGTTAGACAACTCTCATTCAGTTTAAAAACACTTACACAAGTTAAGTCACTCACTCAGAGGACACCTACACACTCTTCAGTCTATTTCACCACAACAACCCGGCCAAACATGACAACTAAATAAAGATGCAATTAAAGTGGCGTTTAACCCTACCAATGACTGGGAGCTCTCTAGGACATAACTAACAGAAGTaattgagtatacaaaacattaaaaacacctgctctttccatgacatagactgaccaggtgaattcaggtgaaagttatcatcccatattgatgtcactttaaaggaggatttttaatCCTTTAAGACATGGCCTGTGTATgggtgccattcagagggcgaaTGGGCAGGACAAAacctttaagtgcctttgaacggtgtatggtagcaggtgccaggcacaccagtttgtgtcaagaaacgCTGCCGCAGGGTATTTCACAGTCAactgtttcccgtgtgtatcaagaattgtccaccacccaaaggacatgcaGCCAATTtaacaactgtggaaagcatcaggagtcaacatgggccagcatccctatggaatgatttcaacaccttgtagagtccatgtcctgattaatttaggctgttctgggggggtcctaatgtttggtatactcagtgtatgtttgGCAGTGTGCATACTGTACAGTCAGcatctttttttaaattacagaTACAGAGATATCAGCAAAGACTTTCTTCTCCTTCAATACTTCAGCTGCACCACCCATACTACTACCTCAATGGCACGTTCTCGCAGCTACGGCCAGTGTTTTTCTCTGGATCTACCAGCTAACCTGAAACACATTGACACCAACTGTTCCTCATAGCCTACAGTCAAGGTTACTAAAAGTACTGTGGTAAAGTGAACTAGTCTGGTACTATCCACTAGCCTTGGGCTGCCTGGAGTCTGATGGAATTTATGTTGGATATAACAAGTGGagatacagtgtgtgtgcgtgcgtggctATAGGTTATCTAATAAGTGGTGAAATTATAGTTACATACAGCAGCAATACTGTAATtacataataataacaattactTTTGGTTTCTATGGGATTCACTGTGGCAATCAGTCTACTGGGCTATCAGTGTAACACGTGAATCTATAGGTCTatagtttatttttttacaataaaaTGTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326049 lncRNA downstream 156235 65821455 ~ 65822590 (-) True LOC110520418
TU326022 lncRNA downstream 195164 65782911 ~ 65783661 (-) True G287556
TU326017 lncRNA downstream 202033 65776565 ~ 65776792 (-) True G287552
TU326009 lncRNA downstream 206927 65769601 ~ 65771898 (-) True LOC110504474
TU325760 lncRNA downstream 210620 65767995 ~ 65768205 (-) True G287331
TU326144 lncRNA upstream 9662 65993773 ~ 65997590 (-) True G287664
TU326147 lncRNA upstream 13857 65997968 ~ 66000189 (-) True G287666
TU326186 lncRNA upstream 85026 66069137 ~ 66069360 (-) True G287693
TU326190 lncRNA upstream 91072 66075183 ~ 66075418 (-) True G287697
TU326199 lncRNA upstream 104194 66088305 ~ 66088557 (-) True G287706
XM_021597733.2 mRNA downstream 116 65973480 ~ 65978709 (-) True LOC110520420
XM_021597732.2 mRNA downstream 15112 65853721 ~ 65963713 (-) True LOC110520419
XM_021597729.2 mRNA downstream 15116 65853721 ~ 65963709 (-) False LOC110520419
XM_036974965.1 mRNA downstream 15116 65853721 ~ 65963709 (-) False LOC110520419
XM_021597730.2 mRNA downstream 15401 65853721 ~ 65963424 (-) False LOC110520419
XM_021597735.2 mRNA upstream 35922 66020033 ~ 66027337 (-) False ttf2
XM_021597736.2 mRNA upstream 35922 66020033 ~ 66027364 (-) False ttf2
XM_021597737.2 mRNA upstream 35922 66020033 ~ 66027601 (-) True ttf2
XM_021597738.2 mRNA upstream 52231 66036342 ~ 66070134 (-) True rnf17
LOC110520425 mRNA upstream 199005 66183116 ~ 66193487 (-) True LOC110520425
TU325523 other downstream 398330 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 531542 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 678408 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 742917 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 902840 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 858560 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1642721 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1899641 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2222479 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2594992 68579103 ~ 68580707 (-) True G290542

Expression Profile