RNA id: XM_021597736.2


Basic Information

Item Value
RNA id XM_021597736.2
length 4117
RNA type mRNA
GC content 0.53
exon number 23
gene id ttf2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66020033 ~ 66027601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTCTGAAACGTATGCTAGCTTGCTATTGTAGCCATCTAACGTTAGCAGGCAGCACATGCATGCTGAAGACGGGAGTGAAAGAAGGGCCAAATAAGGGTAAAAGCTTCTACTTGTGCGGGGAGCGTCAACTGGGGTCTCCCTGTGATTTCACCAAAGTGGCAGGGATCCCGGCCTCACACTGCCTGCTTCATGAGGATTCTATGGTGGAACTCCAGACTCTCATCCGCAGTCAGCAGCAGCAGGGctacagGTTGTACTACCGGTGTGTTTTGGGGAAGAACGCAGGTCAGAGGTGGTGTGGCAATGTTCCCTGGACAGCGCCAGAGGCAGAGAAACGCAGCCCACTGTCTGACAGACAGCTGCAGCCCTCCAGCCTGCCCCCAGAGAGAAATCCATTCAAGGCCCCAGGCAAGACTGACCAGACGTCAGAGTGGAAGAGACTCCAAGATGGGGGGAGACTGGAGGATGAGAGCAAAGGAAAGAATGagaaaggtggagagaaggagaggcttCACAAGAGTGTAGGTAAAGAAAGCGAACACGGGcgaggtatggaggaggaggagagggggatgtcaAGTCCCTCAGAGTCTTGGAGAGACAAACAGCTTCCAGCAGGGATGAAGATAAAGAAGAGAGTATCAGGCGAGGAGAATAAGGAAAGTTCTGAAACATCACCTGAGGAAAAGGAAAAGACTGTCAAGGAGatgaaagacaaaaacaagaaCTCAAACaaagacagccagagagaggctgagaaaaGCAACAACTCTAGCCCGAAACCCCAGGATACAGAGGACCCACACAAAGCCTCAAAGGGTCATCATGGATACTACCCACGAGAGCCACCAACCAATAGCCTAAAAGAGTCTGGAAAGCATGCTGGGAAAAAGCCAAGCACAGATAGGATGAAGAGCAACCCCTCCGACCCAAATGGCACTACCTCTAAAGACGCCCAAGCACATAAGAGCACAGAGAAGACCAAAACCCCAATCCCACAATCTGATAAACCAGCGCAGCGACTTTCCACTCCAACAACTGAACAGGATAAGGAGGCAGAGAAAATGACTGCTTCATCATCACAGCAGAACCAGGACAAGTCCCATTGTGGGAACCAATTTGGAGAGTGGCGttgtgatgaagatgatgatgatgatgtccaGTTTGTTTCAGTTCAGCCAGGTACACAGACGACGTCTCTAGTACCAGTGCCCCTGGTCCAGAGAGCCCTGACATCCTTCCCAGGGTTCcagcctgcctctcaggtcaAAGGTCAGCGGGAGGACCCCAGGGCCCTGCACAGCCAGCTCACTGCTCAGCTCAAACAGAAGAAGGCCACTCTGTCGGTGGTGAATATGTCTGCTCTGCCCGATAAAGGGGAGAGGTTGAAGAGTCAGGTCAAAGACCTGGAGGAGGCTCTGGAGTCTCTCTGCCTCACCACTTCCACTGAGCCAGAGCCTCAGGGTGACGAAGGTAATGCCAACCCGAAGCCCACTCCCAGCCAGTACAACCCATTTAGCTGCCCGGGAGGCACCATCCTACTGCCCATTGCTCCTGCCCCCCTCCAGTACCAGGCCTCCACCAGCTCAATGGGGCTGCAGCTCAGCCAGGGATACACTCAGATGTATGGAGTGAACCCCCAGAGCCAAGCGTTCTATGGAGGCAGGATGACAGACAACCGTCTGCTAGCGGTGAAGAACGCCACCTCTGAGGCCATTGACCACCTCCACAGCTCCCTGGAGTCCTGCCCCGACCCCGATGCTGAGGTTACGGACCCAAAAGGCATCAAGGTGCCTCTACTGGCCCATCAGAGACGAGCTCTGGCCTGGCTGCTGTGGAGAGAGACCCAGAAACCCTGTGGAGGGATCCTGGCTGATGACATGGGCCTGGGGAAAACCCTCACCATGATCGCTCTCATTCTGGCCCAGAAGAAGAAGcaaaaggaggaggagaaagacacTAAATTGGAAGGCTGGATCTCCAGAAATGACTCTAGCCTGGCAGTGTCTCAGGGCACTTTGATCATCTGCCCTGCCTCTTTGGTTCATCACTGGAAGAAGGAGATCGAGAGACACGTCAAGAGCAGCCGACTCAGTATCTACCTGTACCACGGGCCCAACCGCCAGAAGAACGCCAAAgtTCTGGCTGAGCATGATGTGGTGGTGACCACCTACAGCCTTGTCTCCAAGGAGATCCCAGTCCCGAAGGACGACGCAGAGAAACCTAGCAAGGACCCTGAGGATGTGCCATcagccctccctcctctgctGCGGGTGGCTTGGGCCCGCATTGTGCTGGACGAGGCCCACAACATCAAGAATCCCAAGGTGCAGACCTCCTTGGCTGTGTGTAAGCTGAGGGCCAAGGCCAGGTGGGCTGTTACCGGGACCCCCATCCAGAACAACCTACTGGATATATACGCCCTGCTCAAGTTTCTGCGCTGCGCCCCATTTGATGAGTTCAAGCTTTGGAAAACCCAGGTAGACAACGGCtctaagagaggaggagagcgactTAACATTCTGACCAGAACTCTGCTGCTCCGACGCACCAAAGACCAGATGGACTCTACCGGAAAACCTCTGGTGAATCTGCCAGATCGGACCTGTGAGGTGCATCGCCTGAAGCTGTCTGAAGAGGAGCAGTCTGTTTACGATGTGGTGTTTGCACAGTCCAGGTCCACTCTGCAGAACTATCTGAAGAGACATGAGGGAGACAATGGTAAAAAGGGAGACGACTCCAATCCCTTCGACAAGGtggctCGTGAGTTTGGAGTGTCCCAGGCGGACTCTGTGTCCTCCTCCCAGCAGACCCAGGGCCCCACCAGCACTGTTCACATCCTGTCTCTATTGCTCCGACTCAGACAGAGCTGCTGCCATCTGTCTCTGTTGAAGAAGACCCTGGATCCGTCTGAGCTGCAGGGGGAtgggatctctctctcccttgaggAGCAGCTCAATGCCCTGTGCCTCTCCTCCGAGCCCTCGGGCCCCGACCCCAAAGCCACCGTGTCCCTCAATGGGAGCCGATTCGCCTCCGATCTCTTTGAGGACACCCACGAGAGCACCAAGATCGCTGCCATTCTCACAGAGCTGAAGGATATCAGGCAGCAGAGTGAGGCTCAGAAAAGtgtgatAGTGTCCCAGTGGACCAGCATGCTTCACATCGTGGCCGTTCACCTGAGGAGAATGGGCCTGAGCTTTGCTGTCATCGACGGCACTGTCAACCCCAAACGCCGCATGGACCTGGTCGAAGAGTTCAACACCAACCCTAAAGGACCACAGgtgatgcttgtgtctctgtgtgctggAGGAGTGGGCATTAACCTTATTGGAGGGAATCACCTCTTCCTCATGGACATGCACTGGAACCCAGCTCTAGAGGACCAGGCCTGTGACCGCATCTACAGAGTGGGTCAGCACCGAGACGTCACCATCCACAGGTTTGTGTGTGAGGGCACAGTGGAGGATAAGATCTCCATTCtgcaggagaagaagaaggatcTCGCACAGAAGGTGCTGTCAGGGACTGGAGCCTCCTTTACCAAgctctccctggctgacctcCGGGTCATCTTTGGGGTCTGACGACCAGGAAGTAAGGGTGGTGGGGGCAGCCAGACTGAGGACCAGGTAGTAGCGGGGCCAGCCATACTTAAACTATTAGTGTTGTGTATGAATCTGGTTGATAACCCCCTTTGCTCTTGTTGGTTACTGCGCACAACAGTACATATTGGCACATAGTGTGGCTAATGTGGTTGGCACTACTTTGCTGTTATGCGCTTGAATGCTTTGCTGCTACTTTTCTCCACATGGTCTTCTGGCAGGTTGCAGAGCCTCAGGCCTACTAGCTGTGTACTGTTGTATTTCCCATATCCAGCACTCTGTTTCACACTATTCCATGTGTTACGACAACGACCGTGTttctcctggtcaggtcacatggtcttTTCATTGAATACATTTTAAGTGTAATTTATAAGACTGATTTATCTCTGCTGGGTCATGTTATTTCTAATCCTAAATACTTTTACCTCTTATGCTGCGTTTGATTATTAGGTCTTCCTCAAGGCTGTTGGATGTTTTTtaataaaatattatttattaCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326147 lncRNA downstream 19844 65997968 ~ 66000189 (-) True G287666
TU326144 lncRNA downstream 22443 65993773 ~ 65997590 (-) True G287664
TU326137 lncRNA downstream 35589 65978862 ~ 65984444 (-) True LOC110520422
TU326049 lncRNA downstream 197443 65821455 ~ 65822590 (-) True LOC110520418
TU326022 lncRNA downstream 236372 65782911 ~ 65783661 (-) True G287556
TU326186 lncRNA upstream 41773 66069137 ~ 66069360 (-) True G287693
TU326190 lncRNA upstream 47819 66075183 ~ 66075418 (-) True G287697
TU326199 lncRNA upstream 60941 66088305 ~ 66088557 (-) True G287706
TU326359 lncRNA upstream 80508 66107872 ~ 66108434 (-) True G287853
TU326426 lncRNA upstream 181797 66209161 ~ 66246589 (-) True G287919
XM_021597734.2 mRNA downstream 35908 65978827 ~ 65984125 (-) False LOC110520422
XR_005051356.1 mRNA downstream 35922 65978825 ~ 65984111 (-) False LOC110520422
XM_021597733.2 mRNA downstream 41324 65973480 ~ 65978709 (-) True LOC110520420
XM_021597732.2 mRNA downstream 56320 65853721 ~ 65963713 (-) True LOC110520419
XM_036974965.1 mRNA downstream 56324 65853721 ~ 65963709 (-) False LOC110520419
XM_021597738.2 mRNA upstream 8978 66036342 ~ 66070134 (-) True rnf17
LOC110520425 mRNA upstream 155752 66183116 ~ 66193487 (-) True LOC110520425
XM_021597740.2 mRNA upstream 240821 66268185 ~ 66295887 (-) True LOC110520429
XR_005051358.1 mRNA upstream 372703 66400067 ~ 66412373 (-) True LOC118964314
XM_036964598.1 mRNA upstream 444975 66472339 ~ 66475059 (-) True LOC118944607
TU325523 other downstream 439538 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 572750 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 719616 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 784125 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 944048 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 815307 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1599468 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1856388 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2179226 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2551739 68579103 ~ 68580707 (-) True G290542

Expression Profile