RNA id: XM_036974971.1


Basic Information

Item Value
RNA id XM_036974971.1
length 3998
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC118964312
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66027633 ~ 66036299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCGacccatttttttctctctctcgcgggCTTTGTTTCAGTGTTGCGGAACACTTCGAAATCTCGAAACTCCCATTCGTTGTCTTCACAACAAAAATACCGTGAATACGTGTACTTGTCGCATGTAAACAAGCCCTGCCTGGAGAGCACTTTCATGTCATCTCCAGCTGGGTTACAGGCTCAGCAGTGCCAAACAAACTTCCTCTCCCGATGGATGCCAAGCAGCTCTTGTGCCGGGGTTATCCTGAACCACTACCTAGACCTGGCTGAGTCTCTTCGACATAGCTCTGTCTGGGGGTCCCGGGACGTGGTCGATTCCTTCGCCTCTCAATTCCTTTGCCTCAGTGTACATTCCCTCGTCCATGATGCTGAGTCTGGGACAGAATTGAACAAACAGAACCAGCGACCTGGGGATAGGCCTGGAGAGATGGACGGTATGGAGAAGTTGGTAAAGCAGTCTCAGGACCTACCCCTGATACTCAAACTTGAACAGTTCCTCAACAGCCCAGAGCTTCCCTATAGGCCCCCCACAAGGGCCTGCGTCTTCCCAGCTTTGTAGACAGGGGCCTGCCTTCCAACAGCCTCCAAGGGGccaggagcaggagggagaggaTCAGGACCAAACACTGGACAGGGACAGAAGCATGGAGCAGTCCACACAAACATCAGCTGAGTGGGAATGCTGATCATATGGGTGATAATGAGGAGATGGAAGAAGTCATGTTATCCCCCCATTCTGCTCCCTCTATGATCGAAGAATGCAAAGATTAGAGGAGATGACAGTGAACTAGACTCACAGGACAGACCCATTAAACAAGGAATAGAGGGGCAGAAGCAAACATTTGAGGAGCTCCTGGAGGAAGAGCTGAGACTGGCGGAGCAGAGACTGAAGACCACCCAGCAGCAGCAGAGCCCAGAGGCAGTTGAGGGTGCCATTCCCAAAAGGTTCTTCCTGAGGCAAGGGGAGGGCCTCTCTAGATTCACCAATAGAAGCAAAGCCAACAGACAGAGACCCCAAACCCCAGGGGACCTCAGAACCCAAGCCCGCCCAGAGGGTCAGTCAGTGGCCTCCCATACAGTGCAAGACTGCTGTGCTCAACAAGGCGAATAGACCCAGAGATCCCTGCTCACCCCCCCTGGACAGTGGCAGTCCAGACAGCAAGGCAGCGCAGCCAGAGGCAGTGAGACCCGGAGTCCGGCGCAGTCACCACAGACAGAACATGGCACCTGACCTTCTGAGACCTAGGAATGTGATTAGTAACAAGGTGGGTGGGACTTCTCAGCCTGTGAGTAGAACTCCTGCAGCTGCAATTAAACAGTTTGGGcttgaggagaggactggggccCTGCAGAGAAATGGAAGTGGTCCATTGAGACTAGATGGAGCAGCAGAGGGAAAACCAGGCGTTGTTTCAGACTATTCCTTTGAGCTGTCATTTCAGGAGAAGTTGCAGCGCTGGGACTGTGACCGTCACAAGGAGTGTGTGGAGCTAGGAGAGTTTGAGCTGCTGGAGCAGGCAGCCGAGgagctctctttctcctccaactCATCCTTCGTCATGAAGGTGCTGCAGCTGGACCAGCAACACCCCCTCCATGGCAGCTGGGGGCACCACCCGCTACGCCTGTCCTCCACTCCAATCAAATCCCCCAAACCCTTGCCAACTAAAGGTATTCACAGCAGAGGCACCAGTAAAAGTGGCCTAGGAACAGGAACCAGCTCCTCTGAATCATCAGGAGTATTTGCTGTGAGGGCAAAGGAGGTTGTGATGAGGGAAAAAGGAAAAGCCACTGAGGAGGAAGATGAAATGAGGGACCGCAAACATGAGGAAATCTGTATTTCGTTCCATAGCAGCTCTGAATTCGGGGATCAGGAGGAAGTAGCCCGACCGCCGTACCAAACTATATTTCCCAGCAACCCCTGGGAAAACACGCTCCCCACATCCAGCCCTCCATGCGACAAGAGGTCATAtcaggacagagaggggggcagggagagagacctTGACGACTCCACCCTATTGGAAGACAGAGAAGAGGGGGACCGCAAGGGTCGGTTGGTGTTTGATGACGATGACACCTGGAATGACCTGGAGGTGGCTGGCAGAATCATTGAGGACCCCATCAGAACAAAAGGCGCTGCTATAGGAAACAGCCACACTCCCACAATAACAGGGAACGACGTCTCACCCCCAGAGAGGAAGCTGAAGAGAAAGGTGGCTGGGGCCGAGCTGGAGAGGGTGTCAATTATCACAGCAGCCAACCAGGAGCCAGATCCTCCCAGCTTATGGCCAGGCTGTTCCCCTCGCTGAAGCCCAAGACCCaggcccctcctccaccagaGCCTAGGAAGTCTGAGAACGGACCAGGCCAGCAGCAGCACTCCAGgcagctgagggagagagaacgattCAGGACAGAGAACACTGCCCTGGCCAGACTCCGACTGGAGAACGAGAATAACCAGGAATATCTCAGGAAGGAGAGGGCAGAGTTTGAGCAGCAGAAGGCTGAGGAGCTGGCCAGGTTTGAAGAGTTCGAGAGAGGAGACTAAGAAGCTGCAGAAGTAACGCAAGGTGTTTGAGAAGCACACCTCCGCCGCCAGGGCCATACCAGATAAGAGGGAGCACGACGAGATCCAGGCCCTGAAGCAGCAGCTGAGTTCCCTACACAAGGAGCTGAAGTGGAGAGAGAGCCACGGGTCCACCACACACAGGCGTCTCCGACAGCAGATCGACTCCCTGAGCTCAGACAACAGTGCCCTGAGAGACGAGGTCCGCACCCTGGAGAAACTAAGCCTCGGCACCTGGAGGAAGACTGGGACAGACAGCGATAGAGAGGAAGACCGgcgggagaatgagagagagagggagggacccaGGCCATTTGACAGCAACATTGCTCTTGGAGCCAGGGGCCTCAAATTGGCAAGTCCTGACACAGTGAGGAGTTGCCCACCACAGAGCAGTAGCTCCTCTAGAGGCAGTGCTGCTATTGAAGACAGTATCAGGGGCATCCTAAAGAGGTCAGCCCCAACAGCAGCCGCAGCACCCGATCCCACTGTTACAGCTCAGACGAACAACCATCTTTGACCAGAAGTCACCACCCACCACAGAGCCACGACCACTCACACAACCCATCCCCTAGGGCTCCAGGTCTGCGTCCACAGAGGTCAACAAGCAGCAAGAGCTAAGTCAGGATGTCATCATTCACCCTGATGGAAAGATGGAGAGGGTGCTGGCCTGTGGAGAGAGACTCATCATCTTTCCCAATGGGACCAGGAAGGAGGTGTTAGCGGATGGACTGACAGCCAATGTCACCTTCTTCAACAGGGACATCAAGCAGGTTATGGCTGACCAGAGTGTGGTGGGTTACTGACAGTGACCCTTCCCTGGCCTTAGTTAGTGCATTAGCTCAACACCTTAAGTGGGATATTAAACTTACATGAATCCcagatcggtgtgtgtgtggtcctcttACAGATCTACTACTATGCTGATGCCCAGACCCCTCACACCACCTATCCTGACGGCATCGAGGTTCTGCAGTTCCCCAACAACCAGACTGGTGagatttgatggaaacatctcatTATTATACTTAATTACCTCCTTCTCCACCACTTTGTTCTGACCCGAAGCATTTCCCCGATGGCCGTAAGGAGATCACGTACCCTGACCAGACAGTTAAGAACCTGTACCCAGATGGGACGGAGGAGTGTACACTCACTGATGGGACCATCATTCAAGTTAACCTggatGGCAGTAAGGAGATCCGGTTCAACACAGGCCAGAAGGAGGTCCACACAGCAGACTATAAAAGGAGGGAGTACCCAGATGGCAGACAGGAGACCCGCTACACCACCGGACGCCAACGTTGTCATGGACAACAGGCCCTAGGACTGAATCATTTGTGTTTCGAGAAGTTTAGTTTAATGTCTATTTATTTTACCTGATTAATTTATTTTGTAAAATAAACGTTTATCAAATCCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325956 lncRNA upstream 2666 66024443 ~ 66024967 (+) True G287513
TU325913 lncRNA upstream 4977 65959186 ~ 66022656 (+) True G287470
TU325813 lncRNA upstream 166097 65860525 ~ 65861536 (+) True G287383
TU325771 lncRNA upstream 215617 65810570 ~ 65812016 (+) True G287342
TU325763 lncRNA upstream 258072 65769192 ~ 65769561 (+) True G287334
TU325988 lncRNA downstream 26834 66063133 ~ 66063367 (+) True G287530
TU325989 lncRNA downstream 27525 66063824 ~ 66064131 (+) True G287531
TU325992 lncRNA downstream 33029 66069328 ~ 66069643 (+) True G287534
TU326001 lncRNA downstream 50058 66086357 ~ 66086583 (+) True G287543
TU326004 lncRNA downstream 54348 66090647 ~ 66090980 (+) True G287546
XM_021597727.2 mRNA upstream 214138 65777196 ~ 65813495 (+) True LOC110520417
XM_036974959.1 mRNA upstream 390547 65614185 ~ 65637086 (+) False LOC110520416
XM_036974984.1 mRNA downstream 71568 66107867 ~ 66161419 (+) False LOC110504495
XM_036974982.1 mRNA downstream 88508 66124807 ~ 66161419 (+) False LOC110504495
XM_036974983.1 mRNA downstream 88508 66124807 ~ 66161419 (+) True LOC110504495
XM_036974985.1 mRNA downstream 172814 66209113 ~ 66268815 (+) False LOC110520426
XM_036974986.1 mRNA downstream 172818 66209117 ~ 66268815 (+) False LOC110520426
TU325080 other upstream 742077 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 861053 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 917996 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1720273 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1943651 64071432 ~ 64083982 (+) True G285203
TU326785 other downstream 513523 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 694987 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 747074 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 956872 66993171 ~ 66994131 (+) True G288674
TU327725 other downstream 1361658 67397957 ~ 67403366 (+) False LOC110520448

Expression Profile