RNA id: XM_036974986.1



Basic Information


Item Value
RNA id XM_036974986.1
length 4262
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110520426
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66209113 ~ 66268815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTATGCCCCCGGCTCAACCACGCCTCGCGTCGCACGGTAAAGTTCGACGGCCATATTGACTGTCTACACCTCTCTTGCCCGGCGGTGAAACTGGCTCAGTCGCTTCATACATCACACTCCATACCAAGGCTGAGAAACAGCGGAGTGTCTAACGGCAGTGGAGCCCAGGGCGAGTCAACGAGACGGAGGACGATTTCTTTGCATTTTCTCAGCAGAAGGGCAAGGCTGGAGAGAGGACAAAGATGCCCAAACCGaTCAATGTGCGGGTCACCACCATGGATGCAGAGCTGGAGTTTGCCATCCAGCCCAACACCACAGGCAAACAGCTCTTTGACCAGGTGGTGAAGACAGTGGGCCTCCGGGAAGTGTGGTTCTTTGGCCTGCAGTACACAGACAGTAAAGGCTACAGCACGTGGCTCAAACTCAACAAGAAGGTGACGCAGCAGGATGTGAAGAAGGAAAACCCTCTGCAGTTTAAGTTCAGAGCCAAGTTCTTCCCGGAGGACGTGTCTGAGGAACTCATCCAGGAGATCACACAGAGACTCTTCTTCctgcagGTAAAGGAGGCCATCCTGAATGATGAGAACTACTGTCCTCCAGAGACAGCCGTGCTGCTGGCCTCCTACTCTGTCCAGGCCAAGTACGCAGACTACAACAGAGACCTCCACAGGCCTGGCTACCTCACCTCCGACCGCCTGCTGCCACAGAGAGTCTTGGAGCAGCACAAGTTGACTAAGGAGCAATGGGAGGACAGAATACAGACCTGGCATGAGGAACACAGAGGCATGCTCAGAGAGGACTCAGTGATGGAGTATCTGAAGATAGCCCAGGACCTAGAGATGTATGGCGTCAACTACTTTGAGATCAAGAACAAGAAGGGAACAGAGTTGTGGCTGGGTGTGGATGCACTGGGACTCAATATCTACGAACACGAGGACAAGTTGACACCAAAGATTGGCTTCCCCTGGAGCGAGATCAGGAACATCTCCTTCAGCGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCTCCAGATTTTGTGTTCTATGCCCCGCGGTTGCGGATCAACAAGCGTATCCTGGCGCTGTGCATGGGGAACCACGAACTGTACATGAGGAGGAGGAAGCCTGACACCATTGAGGTTCAGCAAATGAAGGCCCAGGCCAGGGAGGAGAAACACCACAAACAGATGGAAAGAGCCCAGCTAGAGAACGAGAAGAGAAAACGAGAgcatgcagagaaagagagggcgaagatagagaaggagaaggacgagCTTGTCGAGAGGCTCAGACAGATTGAGGAACAGACGCTAAAGGCCCAGAAagAGCTGGAGGAGCAGACACGCAGGGCCCTGGAGTTGGaccaggagaggaagagagcgaagGAGGAGGCGGaaaggttggagggagagagacaggcagcggAGGAGGCCAAGGCAGCGCTGGCTAAACAGTCCGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTAGGAGAATTCACTGCCAAAATCGCTCTGCTTGAAGAGGCCAAgaggaagaaggaagaggaggcaACTGAATGGCAACACAAAGCCATCTCAGCCCAGGAAGACCTGGAAAAGACTAAAGAGGAGCTGAAgtctgtgatgtcatcacccCCGGCGCCGGAGCACGATGAGCAAGATGAGACGAACGCAGAGGGCAGTACCGAGCTGCACAGTGACGGGGTCACCAGCCACCGCAGCGAGGAGGAACGTGTCACAGAGGCCCAGAAGAACGAACGCGTCAAGAAACAGCTGCAGGCTCTGAGTTCAGAGTTGGCTCAGGCGAGGGACGACACCAAGAAGACCCAGAATGACATGCTACATGCAGAGAATGTGAAGGCTGGGAGGGACAAGTACAAAACCCTGCGCCAGATCCGACAGGGCAACACCAAGCAGCGCATTGACGAGTTCGAGTCCATGTAAGAGTCAGCGCCCTCCCACCCCCGCGTTGCCATGACAACAGCTCACTTTCTCTGATAGCCGACCCTGCTCGTTCCCACCCCGTTCCCCCAAATCCGTACTTGCAAAAAGGCCAGAGGTGTGTGGATTCAATGTCCCACCCACTACTCCTTGCCAAAGCTCTGCCCACTAGCGTTTGGCCAATCAAACCGCTCCATGCTTAGAGCTCCACCCAACCACATCTGGAATCATCCAATCTGGAATGACAAGCAACATATCCTGCCGAAATGAACTTCTCCTTGAGCAAAGGATAATTTAACCCTTGCATGTCTGATGTAAGAatggattttttaaaaataatgtaGAGAGAATTGAGAGAATTGCCATTTGTAGCTTTTTGATGTTGTTGACAAGCATGTATGTAAAGCTTTAAATATCGTACCttactttttttttgtttgtgaTCAAGTATTTAAATGGTTTTCTTAAACTGCCTTATTCGTCTCATTTCATTTACATTACTTCAGTTTTGGTTTCATATTTAACTGTGGTGAGTTAGCTGTGCTCTAGTCATGGGCCAGCTGATGTTGAACCAGTGGTTTAATTCCTCCAGAATTTGAACACAGCTTTTTATTTGTCCCTTCAAACCTATACGTTTGATGTGTTATTCACCGTCCATTGACGGTTTTGTTAACATATATTTTGGTCCACAATAAAGAATCCATGTATATTTCTTACTTCCAGTCAGTTAAAGTATTTATCCCAGGTTGGATGAGGGTCGAATGGGAGGGAGGCAGCAGTTCAATATTATATGAACGGACTGGTATGAGGAACTGTTTATTTTGAACATTCCAGATGAATCACCTTCCAGGCATTTTAAGAATGAGTGAAGGGAAAATAACCATAAAACCACCTGAGACATTTTAGTGGTCTAAATCATGGTTTTGACACTAAGGTTATGTAACAAATGATCTGTCTAGCTCCTCCTACAACTGGTAAAACAGTCTCTAGTCTAGACCGACGGGTTGCCTCCCACAATGTAACCAATGTTCCAGTCTGGGAAATCTAAGACTAGGTAAAATAGTAATGTCAACTGTGTTATCCTTAAATGTCAACCAaagtactgtatgtactatatgtACCAATCTCTTCTAGATGTGAAATCATTTAAGTGAAACCCATAACTCTAACGTGGTGGTAACCCTTCCAAAGTACATGTGTAGTGTTGTGGATGACAACACACCAGGTTATTCATTCAACTTCATCACTACAGTAAATGTAACAACTGTTTTGATTTTAAATTTAATTTCAGATGTCAGGGTTTATTTATGTACGCATCACCTTCAGACATTCTGTTCAGTAtgacaataataaaaaaaatagatataaaaGTTGTGAAGAATATTtcaggtaggcctatttgaaTTGACATGCAAAAGTGGAGGAAAGTCTAGCATTATTATCATGATGTTGAAATGACAGGCTTCTTATTAAGTGTCGTTAACCTGTCATCCCATTcagtgtaggctacagtacatgtcTGACATATGCCCCCCGAGTGTTGAAATTTCATTATCACATGATACACACATACCTCACTAGCATCCTACTGTATCTAAATTAACCTGAGAATAATTTCGGCAGCAAACCCATTCCTTTCCCCCTGAAAAAAACTCATCCTCACCACCTTGAGTAAGGCTTTATTGCTTTATTATTCATAACTCATAAGGAGTCAACATTTTCCATTTGGCCTCAGTTCCCTGAATCAGCAAGTAAGACTGCTACACATGCCAGAGTATTATAAAGAGTCACGTGCTCTGGGGTTACGGTACTTAAAGCTCATTGTTTTAACAtgcgctgccccccccccccccccccccccccccccattcacatACTGCACAGTCACTAAGGCAAgaacatcaacatcacatcagGTCACAGTTCTCCATTTTCCTCCATTACATTTTGGCTTGAAATGACCCATGTTGACCTGTGAAGAGGGGATCATCATAATACATATATAACATAGGCTAACACTATCCCTGACGGAATACTGCATCCCAACCTTATTTTTTGCACTTTTATAAGGCATTTATTAGATTTAACAGTTTTATTGTAGCACAAATTATGTTGGATTTAAAGCACAACAGGGATGAATATTTCAATAAATTATACATGGTATTTGGAGAAGTGTCTGACAAACTGTTTTTTAAACCTGAATTGTAGGCCTTGGATACAGACGGACACAATGAAACAAAGTCAAATAGAATAATATTCTAACCAGtcagatgaaataaaataaaattaaccAAATTCcaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU326004 lncRNA upstream 118137 66090647 ~ 66090980 (+) True G287546
TU326001 lncRNA upstream 122534 66086357 ~ 66086583 (+) True G287543
TU325992 lncRNA upstream 139474 66069328 ~ 66069643 (+) True G287534
TU325989 lncRNA upstream 144986 66063824 ~ 66064131 (+) True G287531
TU325988 lncRNA upstream 145750 66063133 ~ 66063367 (+) True G287530
TU326340 lncRNA downstream 4324 66273139 ~ 66273431 (+) True G287834
TU326341 lncRNA downstream 4672 66273487 ~ 66273723 (+) True G287835
TU326343 lncRNA downstream 8444 66277259 ~ 66277483 (+) True G287837
TU326348 lncRNA downstream 14887 66283702 ~ 66284014 (+) True G287842
TU326349 lncRNA downstream 16093 66284908 ~ 66285501 (+) True G287843
XM_036974984.1 mRNA upstream 47698 66107867 ~ 66161419 (+) False LOC110504495
XM_036974982.1 mRNA upstream 47698 66124807 ~ 66161419 (+) False LOC110504495
XM_036974983.1 mRNA upstream 47698 66124807 ~ 66161419 (+) True LOC110504495
XR_005051357.1 mRNA upstream 172818 66027633 ~ 66036299 (+) False LOC118964312
XM_021583262.2 mRNA downstream 101242 66370057 ~ 66387340 (+) True LOC110504505
XM_021597745.2 mRNA downstream 143638 66412453 ~ 66433149 (+) False LOC110520430
XM_021597741.2 mRNA downstream 143638 66412453 ~ 66434626 (+) True LOC110520430
XM_021597748.2 mRNA downstream 208222 66477037 ~ 66489419 (+) True LOC110520432
XR_005051359.1 mRNA downstream 285739 66554554 ~ 66555551 (+) True LOC118964315
TU325972 other upstream 172915 66034420 ~ 66036202 (+) True LOC118964312
TU325080 other upstream 923561 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 1042537 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 1099480 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1901757 64306512 ~ 64307360 (+) True G285763
TU326785 other downstream 281007 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 462471 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 514558 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 724356 66993171 ~ 66994131 (+) True G288674
TU327725 other downstream 1129142 67397957 ~ 67403366 (+) False LOC110520448

Expression Profile


XM_036974986.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XM_036974986.1 Expression in each Bioproject

Bar chart with 16 bars.
XM_036974986.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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