RNA id: TU326296



Basic Information


Item Value
RNA id TU326296
length 429
lncRNA type read_through
GC content 0.40
exon number 1
gene id LOC110520426
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66209113 ~ 66268815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGAAGAATATTtcaggtaggcctatttgaaTTGACATGCAAAAGTGGAGGAAAGTCTAGCATTATTATCATGATGTTGAAATGACAGGCTTCTTATTAAGTGTCGTTAACCTGTCATCCCATTcagtgtaggctacagtacatgtcTGACATATGCCCCCCGAGTGTTGAAATTTCATTATCACATGATACACACATACCTCACTAGCATCCTACTGTATCTAAATTAACCTGAGAATAATTTCGGCAGCAAACCCATTCCTTTCCCCCTGAAAAAAACTCATCCTCACCACCTTGAGTAAGGCTTTATTGCTTTATTATTCATAACTCATAAGGAGTCAACATTTTCCATTTGGCCTCAGTTCCCTGAATCAGCAAGTAAGACTGCTACACATGCCAGAGTATTATAAAGAGTCACGTGCTCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU326337 lncRNA upstream 5777 66261704 ~ 66262108 (+) True G287831
TU326324 lncRNA upstream 23655 66237634 ~ 66244230 (+) True G287818
TU326323 lncRNA upstream 24884 66236095 ~ 66243001 (+) True G287817
TU326293 lncRNA upstream 33863 66209165 ~ 66234022 (+) False LOC110520426
TU326294 lncRNA upstream 33863 66209165 ~ 66234022 (+) False LOC110520426
TU326340 lncRNA downstream 4826 66273139 ~ 66273431 (+) True G287834
TU326341 lncRNA downstream 5174 66273487 ~ 66273723 (+) True G287835
TU326343 lncRNA downstream 8946 66277259 ~ 66277483 (+) True G287837
TU326348 lncRNA downstream 15389 66283702 ~ 66284014 (+) True G287842
TU326349 lncRNA downstream 16595 66284908 ~ 66285501 (+) True G287843
XR_002472978.2 mRNA upstream 35695 66228399 ~ 66232190 (+) True LOC110520428
XM_036974984.1 mRNA upstream 106466 66107867 ~ 66161419 (+) False LOC110504495
XM_036974982.1 mRNA upstream 106466 66124807 ~ 66161419 (+) False LOC110504495
XM_036974983.1 mRNA upstream 106466 66124807 ~ 66161419 (+) True LOC110504495
XM_036974970.1 mRNA upstream 231586 66027647 ~ 66036299 (+) False LOC118964312
XM_021583262.2 mRNA downstream 101744 66370057 ~ 66387340 (+) True LOC110504505
XM_021597745.2 mRNA downstream 144140 66412453 ~ 66433149 (+) False LOC110520430
XM_021597741.2 mRNA downstream 144140 66412453 ~ 66434626 (+) True LOC110520430
XM_021597748.2 mRNA downstream 208724 66477037 ~ 66489419 (+) True LOC110520432
XR_005051359.1 mRNA downstream 286241 66554554 ~ 66555551 (+) True LOC118964315
TU325972 other upstream 231683 66034420 ~ 66036202 (+) True LOC118964312
TU325080 other upstream 982329 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 1101305 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 1158248 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1960525 64306512 ~ 64307360 (+) True G285763
TU326785 other downstream 281509 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 462973 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 515060 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 724858 66993171 ~ 66994131 (+) True G288674
TU327725 other downstream 1129644 67397957 ~ 67403366 (+) False LOC110520448

Expression Profile


TU326296 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU326296 Expression in each Bioproject

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TU326296 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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