RNA id: XM_036974993.1


Basic Information

Item Value
RNA id XM_036974993.1
length 3895
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110504514
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66732237 ~ 66747293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagtccaacgccctaaccactaggctaccctgccgccccaattctCTTGATGGCGTTATGGAAACAGGTTTTATTGGCTAAATTTGGAAACTCCTATCTTGCTGCAAAAAAATAGAAATGTCTCGTTTCAGGCCTTTTGGGCGGGTTTTGAGACATCGTTTGTTTAGACATTTGATTTTGACCCTGGCAACCCTGCGTAGTAGGTTACTTTACCTGTGTGCAGGTAGCCAAAGTCGCATCGGAATAAGAACTTTCGACTCATTGTTTGCTTGAGTAGTTAGGATACATCTATGTGTTCGGATTTAGACTATATGTAAGGTTGTCGTCCATAATTTAGTTTGTCATTTGAAACAATCCCGGAGCGTTCCAGATGGAATGATATCTGAAACGtgtactttcacttttacttactAGCATACAGGACTGTCAAACTCGGACCGAAGGAAATGGCAGGTAGCTTTTTTGGGAAAGTTATACTGCTTTTGGTTTATTTTCTCGTGGAGGTGACAGGTGAACAGCAGTATGGTGGCCTGGGAAGAGAGATCACCCTGACCCCCAAGGTCTCAGGACAGCCTGAGGACATCCTGTGGAAACACAATGGGAACAAGGTGGTGGAGTTTGATGGGAGTCAGAATTTTGAGTATGGCAGGTTTAAAGGCAGGACCATCCTGGACTGGGACTCTGGAGCGCTAACTATCAAAGGTCTCACTGATGCAGACAGTGGGCCCTATGAGTTAGAGGCTGTCGTCAAGGGCAAGCTGCAGTACTCTCAACATGAGGTGGGGGTTATTGATGATGTGGCACAGCCCAGCGCAACCTGTGTGGTTGACACAACCCCAGAGAACATGGACAGAACCCTGCTGTGCTCAGCTGACCTCCAGCCCCTGACCCAGTTCATCTGGAGGAGTCCTGAGGGGTCAGAGAGTCCAGGACCTGAACTGTTCATACCTGGGGGGGAGAACCAGGAGTCTATCTACACATGTGTGGTGAAAAATCCtgttggtgagaaaagtgcagaGTTCACCCTGAAGGACTGCTACACTGAGGAAGGCTCATCCAGTGTCCTGGCTGTGGTCCTGTCCATTGTCCTTCTCGTCTTAGTTGCTGTTCTGGCATTTCTCTTGTGGTACTACTGGAGGAAATGCAAGAAACCTGAAGCTGCACTGAGAAAATCTGAAGAGGAGAAAGGACTGATGGAAGTTACAAAACAAGGAAACAAAGATCCTGAGGATGACCATTCTGAGAACACTGGAAATATAACTTCTATACCAAAAGTGACAGACACAGAGCATGTACAGGACAAGCCCAAGCCAGGCCAACAAGACCTAGTCACACCAGACCACACCCAGGCCCAACAAGACCTAGTCACAGCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACAGAAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACTCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACTCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACAGAAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACTCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTACTCACACCAGACCCCACCCCTGCCCAACAAGACCTACTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACAGAAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCCCACCCCTGCCCAACAAGACCTACTCACACCAGACCCCACCCCTGCCCAACAAGACCTACTCACACCAGACCCCACCCCTGCCCAACAAGACCTACTCACACCAGACCCCACCCCTGCCCAACAAGACCTAGTCACACCAGACCACTCCCAGGCCCAACAAGACCTAGTCACACCAGAATCCAAAGAAACCAAGCTAGGCACGCCCACACCAGAACCCAACCAGGAAACAGTTCCAGCTCCAGAGACAGCTCCAGGCCAAAAATACCCAATCACAACAGAGACAGCTTCAGGCCAAAAATACCCAATCACAGCCGAGACAGCTCCAGGCCACACAGACTCAGCAGGCACAACAGAGACAGCTTCAGGCCAAAAATACCCAATCACAACAGAGACAGCTTCAGGCCAAAAATACCCAATCACAACAGAGACAGCTTCAGGACAAACAGAATCAGCAGGCACAACAGAGACAGCTCCAGGCCACACAGACTCAGGAGGCACAACAGAGACAGCTCCAGCCCAAACAGACTCAGCAGGCACAACATAGACAGCTCCAGGCCACATAGACTCAGCAGGCACAACAGAGACAGCTCCAGGCCAAACAGAAACAGCAGGCACAACACCCAAATGGATTCCACTAAATGCAGAAACAGATAAACCCAACCAGGACATAGGGCACAAGAAGGCCCTGCTAGACCTGAACAAACCAGGTCTTAAACAGGAGAATGAACTAGACCAAGAATCAGACAAGCCCCAAGAGGAGATGACAAACCTGTACACGGGAGATGGTAAACATGAGAGCGACTCAGGCACTTAATGATGAATGATGAAAAGCCAGAGATAAAGATCCAAGGAGAAGGACCGTACACAGCAGACCACAAAGACAATAACCAAACAAATCAACATACACAGGAGGACAACCAGGACATCCAGTCAGGGGAGTGAAGACATAATAATGATGTGGAAGAATAAGGGAAAGGGCAAAGAGTAAGTAATGAGGAGAACAGAGATGGGATAATGGACCACAATAGATGTATGGGTGCAAACACAGAGGATGATGGGGGAATTGAagtagagatggaggaagaagggATAGAGCAGAAGGAACCAGACACAGATAAAGAAGGAGATAATACCAACCAAACATCTACTCAGAGTGATGAGGAGCTGGATGAGACACCCATCACAGACCCCAATGAGCAGCACATTACCCAGACTACACTACAGGATAGTCCACCGGGTAGTCCAGTGACAATAATCCCTAATGCAAATAACCCAGTAGAATTATGGGTAAGCTGTATGACTTTAAATCCACTGTTTTTGAGATGACACTAAAGTTTGGATAACAGGTCTCCACCTTATTTTCTACTGAGGTTCTACCCTCATACTGTTAGAAGAAAAACTCTGGTGAAGAAAATGCTGAATGCTACAGTGTAATACAAGCATTGGCATTTCTTGATTTTGGTTTCATAGTTTGCAAACAGCATTTTATTCTCTAGTTATGTTTCAGTTCTACGTACCTGTGGTAGCTAACATAATACATTATTTACTACAAGTTAATACACTATTTGTTATTTTAgctcaatttaaataaatgttttaatgaACCTTAACATACTGTTATTGCTAAAGAACTTACTTAGGCTACTGATATGCCATCTTGATGGGTTGTCAGAGGTCCTCAGTGACCagtgtaaataaataaatgttaacaGAATGATGTGAATAAATGACTAGAACAAGCGGTTGTCACTCTGCATCATGTGGGACTAACAGCCCTCAGCAGTGGcctgtattcatggatgccaagggaagccaggcttccccaactATTTAAACAATCAATAAATACAAATTCTCAattaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326934 lncRNA downstream 54453 66677579 ~ 66677784 (-) True G288397
TU326893 lncRNA downstream 85647 66646379 ~ 66646590 (-) True G288356
TU326888 lncRNA downstream 87887 66643990 ~ 66644350 (-) True G288351
TU326825 lncRNA downstream 173968 66558011 ~ 66558269 (-) True G288290
TU326823 lncRNA downstream 176033 66555568 ~ 66556204 (-) True G288288
TU327071 lncRNA upstream 13496 66759974 ~ 66760307 (-) True G288507
TU327091 lncRNA upstream 43370 66789848 ~ 66790089 (-) True G288525
TU327104 lncRNA upstream 49632 66796110 ~ 66796898 (-) True G288528
TU327174 lncRNA upstream 72176 66818654 ~ 66829553 (-) False G288563
TU327184 lncRNA upstream 73744 66820222 ~ 66829553 (-) True G288563
XM_036974988.1 mRNA downstream 194342 66490468 ~ 66537895 (-) True LOC110520431
XM_036964598.1 mRNA downstream 257178 66472339 ~ 66475059 (-) True LOC118944607
XR_005051358.1 mRNA downstream 319864 66400067 ~ 66412373 (-) True LOC118964314
XM_021597740.2 mRNA downstream 436350 66268185 ~ 66295887 (-) True LOC110520429
LOC110520425 mRNA downstream 538750 66183116 ~ 66193487 (-) True LOC110520425
XM_021597756.2 mRNA upstream 273976 67020454 ~ 67023408 (-) True rpe
XM_021597757.2 mRNA upstream 319879 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA upstream 319879 67066357 ~ 67078648 (-) True LOC110520437
XM_021597762.2 mRNA upstream 478383 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 529251 67275729 ~ 67286960 (-) True LOC110520443
TU325523 other downstream 1151742 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1284954 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1431820 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1496329 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 1656252 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 96193 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 880354 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1137274 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1460112 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1832625 68579103 ~ 68580707 (-) True G290542

Expression Profile