RNA id: XM_021597757.2


Basic Information

Item Value
RNA id XM_021597757.2
length 1604
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC110520437
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67066357 ~ 67078648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGAGGAGACCGGACACTCACCCACTCAGTCAAGCCAGATATCGGAGAGCTCACAAccaccatctctccccatctcggaCAAAGCATAACATAACTGGACATCACTTCGCACTAGAGACACTGTGCCATTTCTTCGAAGAGGCAACAAGTAAGGGATGTTTTTCTCAATTACAAATCCCAGATCAGTGAGGTGTGCGTGATCGTTCCCAGCAAACGGCAGAAGGATGAACAGCTTCGATCTGGATGAGCTGTTCGACACGTGGGAGGACCTGAACCTCACAGGCCTCCTGGAGAACGGGACGCGCGTGGAGATGGGTGGCTGTCCCACAGCCTTCGACCGCAGCGCCCTGCTCCACTCCATGTGCATCCTCTACGTCTTCATCTTCGTGGTCGGTTTGGCCGCCAACAGCCTCGTCCTCTGGATCAACATCCGCGCCCAGCGCACCACCTCCCCTCGCCACGAGACCCACCTTTACATCGCCCACCTGGCGGCGGCTGACCTGTGCGTGTGCATCACGTTGCCCGTGTGGGTGAGCTCCCTGGCACAGCACAGCCACTGGCCCTTCAGCGAGTTGGCGTGTAAGCTCACCCACCTGCTCTTCTCCGTTAACCTCTTCAGCTCCATCTTCTTCCTGGCCTGCATGAGCGTCGACCGCTACCTGAGCATGACACGGCCGGCCGACAGTGAGGATGGGGGTCGGCGCCGGAAGCTGATTCGCCACGGCGTATGTATGGGGGTGTGGCTCCTGGCTCTGGTGGCTTCCCTGCCGGACACATACTTCCTGCGGGCTCTGAGGTCATCACAAGGGGAGGTAGTGCTGTGCAGGCCGGTGTACCCAGAGGAACACCCTAGGGAGTGGATGGTAGGAGTCCAGCTGAGCTTCATCCTGCTTGGCTTCATCATCCCCTTCCCTGTCATCGCTCTGGCCTATGCCCTCCTGGCCAAagcactctcctcctcctcctcctcttcctcctcggcaGTGGAGCAGGAGCGTCGTGTGAGCCGCAGGATGATCCTGGCCTACATAGTGGTGTTCCTCGGCTGCTGGGGGCCCTACCACGGGGTGCTCCTGGCCGATGCCCTCTCCCTGCTGGGCCTGGTTCCTCTGAGCTGTGGGCTGGAGAACGCCCTCTACGTGGCGCTGCACCTCACCCAGTGTCTGTCCCTGCTCCACTGCTGCGTCAACCCCATCCTCTACAACTTCCTCAACAGGAACTACCGCTACGACCTGATGAAGGCCTTCATCTTTAAGTACTCCACACGTACAGGCCTGGCCAGGCTCATAGAACAGACCCATGTCTCTGAGACAGAGTACTCTGCCGTCGCTGTGGAGAACACACCACAGATCTGAGACTAAACTCTAGAACACACTCTGGAACTCAAAAACACATCAAGGACATTTAGAACATAGTCTAGATCTGTGGTCACCAACTGGTCCATCTCCAAGGCTTTCctagtcgatcgccaaacatttctgtaaaaagcCCAACGAGAAAGCCTTGCGTTCTTAATTGTTTCGCTCTGTTTGCGGTAGGTGCACTTCATTCAGCTGCCCTGCTTGCCAGGTAGTCGAAGTGTTCCCATTTTTAATAATTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327480 lncRNA downstream 58818 67007267 ~ 67007539 (-) True G288828
TU327474 lncRNA downstream 72226 66993001 ~ 66994131 (-) True G288824
TU327424 lncRNA downstream 139008 66927068 ~ 66927349 (-) True G288781
TU327423 lncRNA downstream 139855 66926276 ~ 66926502 (-) True G288780
TU327420 lncRNA downstream 143918 66921697 ~ 66922439 (-) True G288777
TU327874 lncRNA upstream 118718 67197366 ~ 67197865 (-) True G289187
TU327884 lncRNA upstream 127123 67205771 ~ 67205978 (-) True G289197
TU327886 lncRNA upstream 129485 67208133 ~ 67208438 (-) True G289199
TU327894 lncRNA upstream 133330 67211978 ~ 67212188 (-) True G289205
TU327921 lncRNA upstream 183815 67262463 ~ 67262828 (-) True G289231
XM_021597756.2 mRNA downstream 42949 67020454 ~ 67023408 (-) True rpe
XM_036974990.1 mRNA downstream 319064 66732237 ~ 66747293 (-) True LOC110504514
XM_036974996.1 mRNA downstream 319877 66732237 ~ 66746480 (-) False LOC110504514
XM_036974992.1 mRNA downstream 319879 66732237 ~ 66746478 (-) False LOC110504514
XM_036974993.1 mRNA downstream 319879 66732237 ~ 66746478 (-) False LOC110504514
XM_021597762.2 mRNA upstream 146213 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 197081 67275729 ~ 67286960 (-) True LOC110520443
XM_036975007.1 mRNA upstream 445953 67524601 ~ 67541697 (-) False LOC110520451
XM_036975006.1 mRNA upstream 445953 67524601 ~ 67541920 (-) False LOC110520451
XM_021597777.2 mRNA upstream 445953 67524601 ~ 67542329 (-) False LOC110520451
TU327202 other downstream 223476 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1485862 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1619074 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1765940 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1830449 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 548184 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 805104 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1127942 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1500455 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1547684 68626332 ~ 68647620 (-) True G290567

Expression Profile