RNA id: TU327814


Basic Information

Item Value
RNA id TU327814
length 202
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC118964316
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67521551 ~ 67522717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtgtagagaggctagcactggagtaatatgatacaattTTGGGGTtatagtcaagattctagcagccatatttagcacttaCTGAACTGTATTTAGTAATGTATCCAGGTAGCCAGAGAGTAGAGCACCCAGttgtctaatctagaagtgacaaaagcattaGTTTTTCTGCACCATTTTTGGACAATGAGTTTCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327813 lncRNA upstream 322 67520884 ~ 67521229 (+) True G289136
TU327810 lncRNA upstream 2752 67518506 ~ 67518799 (+) True G289134
TU327806 lncRNA upstream 10560 67510763 ~ 67510991 (+) True G289130
TU327786 lncRNA upstream 66984 67454278 ~ 67454567 (+) True G289111
TU327781 lncRNA upstream 84950 67436309 ~ 67436601 (+) True G289106
TU327817 lncRNA downstream 351 67522103 ~ 67526207 (+) False G289138
TU327818 lncRNA downstream 351 67522103 ~ 67526207 (+) False G289138
TU327815 lncRNA downstream 2852 67524604 ~ 67526207 (+) True G289138
TU327823 lncRNA downstream 7351 67529103 ~ 67532651 (+) True G289142
TU327826 lncRNA downstream 9598 67531350 ~ 67532244 (+) True G289144
XR_002470759.2 mRNA upstream 1389 67519370 ~ 67520162 (+) False LOC110505416
XM_036975002.1 mRNA upstream 17327 67461512 ~ 67504224 (+) False LOC110520450
XM_036975008.1 mRNA downstream 78149 67599901 ~ 67603232 (+) True LOC110504522
XM_036965127.1 mRNA downstream 205141 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 359664 67881416 ~ 67886396 (+) False LOC110520459
XR_002472984.2 mRNA downstream 359664 67881416 ~ 67886396 (+) False LOC110520459
XR_005051362.1 mRNA downstream 359665 67881417 ~ 67887339 (+) False LOC110520459
TU327812 other upstream 1581 67519326 ~ 67519970 (+) True LOC110505416
TU327792 other upstream 42622 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 112001 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 118185 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 527420 66993171 ~ 66994131 (+) True G288674
TU328193 other downstream 103601 67625353 ~ 67632210 (+) False G289455
TU328195 other downstream 103601 67625353 ~ 67632210 (+) True G289455
TU328233 other downstream 157110 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 239985 67761737 ~ 67762423 (+) True G289517
TU328723 other downstream 701973 68223725 ~ 68225306 (+) False G289883

Expression Profile