RNA id: XM_036975007.1


Basic Information

Item Value
RNA id XM_036975007.1
length 2781
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110520451
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67524601 ~ 67542329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGAGTCGCTGACATTACAATTAATCATGAGGATGAGGAACCTCTGGACCAAAGCAGGTGTTCTGGGCTCGGTATCCATGGCGTTTGGATCCATGTTCTGGTCTCAGAAGAAGACGGAAACGACTCAGACGGGTTCGACCACCGCATGCACGGAACCACCTTCTCCTTATGAGCTCAAACTCGTGCAAGTCCTGTTCCGCCACGGAGCCCGAACTCCGCTGAAGTCTATACCGGATGTCATGGAGGCCCAGTGGGTGCCTAACCTCCTGgaacccccagcacacacacatatcaacTATGTGGTGACAGACCTGGAAGGAGGTCCACGGCCCTCCTCACCGGTGGAGGACAGCTACCGGGCCAACAtactgagtGGGGGTACGTACCCAGGTCAGTTGACCACGGTGGGCATGCAACAGCTGTATGAGCTGGGAGAGAGGCTGAGGAAGAGGTACATCAAGGACACGGCCTTCCTCAACCCCACCTTCAGCCCTACAGAGGTCTAtgtgcGTTCCACTAACATTGTAAGGACCATAGAGTCTGCCAAGTGCCTGGTGGCAGGGCTGTTCCAGCAAAGCCAGAGTGACATGGTTTCCATTCTGACGACTGAGGCAGAGTCAGAGATCCTGTACCCTAACTACCACGGGTGTAGACTGCTCAAACACCTCAGCGGTCATCGCTGGGCGGAGTCGTCCACTCTGCCAGACATCGCTGCGGACTTGAGGAGCATCCAGAGTGCTCTGGGCATCGCTGCCCACCAACGGGTTGACTTCATCCTCATCAGGGATGACATGGTGGCCAGAGAGACACACGGACTGCCCTGCCCACCAGTCCTGGACTCCTGGAGGAACACAGTGGAGCAGAGAGCTGTGGAAATGATCTGTCACATCTACGAACCCAGcaagagGGAGAACCTGCAGCTGTGTGTGGGTCCCCTCTTCCACACCCTGATGGGCAACATTGAAGACCATCTACAGGGCACAACCTCAGAGTCCAACAGGAAGCTGTTCCTGTACTCTGCCCACGACACCACTCTGATGCCCTGTCTCATGGCCCTGGGGGTTTTTGACATGCAATGGCCACCGTACGCCGCTGACATCACCCTGGAGCTGCATCAACACAGGCAAACCAAAGAGGCCTTTGTCAAAGTGTCCTACATTGGCAAGGACCAGTTGATTCCAGGCTGTAGTGGAGTCTACTGCCCCCTGCAGGAATTCAAGCAGGCCTTCTCTAACTACTCACTGACCTCTGAACTCTATGAGTCGCTCTGCAACCGCACAGAGGGCATGGCCGACCCCTGAGGCTTCCACACTCTCACTGTTACCAGCCACCCTGTTTACATCCCACCAGACATCCACTCTCCAGCCCTAGCCTAGCATTAGCCCGCATATTAGAGTATTTAGTATGTTAGGATACCTCATTGTTTAAGCCAGGGGTGGGCAAACTTTTTGGCTTGAGGGCCATATCGGGATTTAGAAATTCGATGAAGGGCCGTACAGATTTTGGGGGGCTTATTTTATCTATACATTATTGTTAATCAATTTGCGGGCCAGAAAATAGGTCCATTGTAAATGGGTCCATTATAAATAACCCATTGGGCTCCCTAgtggcacagcatctcagtgctagagatgtcactacagacccttgttcgattccaggctgaatTACAACTGGCtgtggttgggagtcccatagggtggcgcataattggctcagcgttgtctggggtaggccatcaAATCAAATAGGTCCATTATAATGTTCAATCTAGTTTTAGACATTCAAGTGTGGCCTGGAGTGTTTATGTTAACCAAAATTATAATTCCCCCCCACATCTATTTGATTATTTTGTACCTCCCGTGGGCTGGATTGAATGGTCATGTGGGCCAGAGTTTGCCTGTCCCTGGTCTAAATGTACAAAGGTAGCGTCACTCTCAAAGTGGATAACTGGCTTTGAAACCACACCCAGGGCAATAGGCGTCCTGTGTGGTACTGCTTCAACTGGTTAAGATAGtcagtcctgtgtggctcagttggtagagcatggtgcttgtaacacCAGGTTTCTGGGTTccattcccatgggggaccagtatgaaaatgtatacacacaccttggataagagcgtctgctaaatgactaagagGAAGAAAGTTTTACTTTACAAAGTAAATCTTAATAATATTGAAATAATCTGGTGATATTATAATGCCTAAAATGTTACCAATTCTAATCATAAATGTACTTTCTGCGACAGTACTATGCACAGAGCGATGTGCTTTTATGTCTGTAGATACACTGCATTTAGCTGGTTATTACTTTATGCACAGCACTGTGTAAATGACTGGGtttatagatactgtatattgaCTTTCTGAAATGTTCTGGCTTTGTTTTTTTTTGAGAGTGAACCAAAATGCTTCACAGCAAACTGCAATCTTCTCCTCAGGGGAAAACCAAGCACTTCATGTACATAGTGCTCATTAACCAAGGGTACCAAAATGTATGGTGTGTATGAGAGTATGTGTTTACCCACTCAGAATCATTCATTTTAGAACCTTTTTAAAAAGGGATTTATTCTGTTTACGATATGTTGTGAGTGAAACAGTAGGTGCCTTCTTTTAGGAATGTGTTGATTATATTGAGTGTTTAAATGATATGCATGGACATGTGAGCAaatatacactacacactggAGTGTTTGTTGGTTCTAGGTGTCATCATGGGGAGTTGACCTGACTTTGGAGTGGTGGTTATAATAAAGAGTTGGTCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328106 lncRNA downstream 5349 67518882 ~ 67519252 (-) True G289382
TU328099 lncRNA downstream 11446 67512914 ~ 67513155 (-) True G289378
TU328092 lncRNA downstream 22472 67501613 ~ 67502129 (-) False G289371
TU328091 lncRNA downstream 22472 67501861 ~ 67502129 (-) True G289371
TU328073 lncRNA downstream 39939 67479189 ~ 67484662 (-) True G289360
TU328118 lncRNA upstream 2131 67543828 ~ 67544233 (-) True G289394
TU328150 lncRNA upstream 49368 67591065 ~ 67591402 (-) True G289421
TU328480 lncRNA upstream 80421 67622118 ~ 67628501 (-) True G289674
TU328483 lncRNA upstream 82514 67624211 ~ 67631209 (-) False G289676
TU328485 lncRNA upstream 82514 67624211 ~ 67631209 (-) False G289676
XM_021597764.2 mRNA downstream 237641 67275729 ~ 67286960 (-) True LOC110520443
XM_021597762.2 mRNA downstream 288356 67224861 ~ 67236245 (-) True LOC110520442
XM_021597757.2 mRNA downstream 445953 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA downstream 445953 67066357 ~ 67078648 (-) True LOC110520437
XM_021597756.2 mRNA downstream 501193 67020454 ~ 67023408 (-) True rpe
XM_021597780.2 mRNA upstream 3900 67545597 ~ 67552019 (-) False LOC110520452
XM_021597779.2 mRNA upstream 3900 67545597 ~ 67568698 (-) True LOC110520452
XM_021597782.2 mRNA upstream 75793 67617490 ~ 67636658 (-) True LOC110520453
XM_036975013.1 mRNA upstream 143353 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA upstream 143353 67685050 ~ 67706221 (-) False LOC110520454
TU327202 other downstream 681720 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1944106 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2077318 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2224184 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2288693 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 85135 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 342055 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 664893 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1037406 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1084635 68626332 ~ 68647620 (-) True G290567

Expression Profile