RNA id: XM_036965132.1


Basic Information

Item Value
RNA id XM_036965132.1
length 1268
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC118944713
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67776411 ~ 67786849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACAGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGAGAACACAGGAGCTTAAACACATAACATGGCAGAAAAGTACTCAGCATGAAAAACATAATTTGATTCATATTTATCCAAATGGGGTTACTGACTTTGTTGTATCAAATGGATTAAAAGGCAGAGTTCAGTTAATTGGGAACTTATCAGAAAAACTTGGATCAATTCGAATAACAGCTGTCAGACTGTTGGATGAAGGCACCTTCACATGTATCTTCAATGTTTTCCACAGTGGAGCATACACTACAGAGATATCTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTCGATGTCCCTCCTGTTGTTGGGGAGAAAGAGGTTATCCTGGCAACCTGTGTGGCTGCTGGTGCCAAGCCACAGGCAGATGTGAAGTGGAAGACAGGGACATTGGGCAGTTTGTTGAAGACAGTGACTAACTCCACCCAGCACGCCAACGGAACCACCACAGTACTCAGCCAACTGCTCGGGGTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAATAGCTTCAACTACAccatagacatccactaTCCACCTCAGACAGTGAACATTACTCTTAGTGAGACCTCTCAAACCTTAGTCCTATGTGTAGCAGATGGTAACCCACAACCCAACTACACCTGGAGCAGCTGGCTGcagaaacacacacacacactctcatacatTGTCCTCGACTCCCTCCCCAGAGAGGGCCAGCCATGGCCTGGCTCTTcagtgagagcagagagagacacactaatTCTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTATGGACGAGCAACTGGCTCCATCTATGTAAACACTTCCTCTGGTGAGAAGCACCTTACACAAACAtattcactgacacacacacgttgTTGCTTAACTGATTGCTTATAATAACtgtattccctctctcctcacagagACCTGCCACGTTCTGCTCGTTGTTATTCTATGTCTTGTGTCTATGTGTTGCTGCTGCTCCTGCACTTTTATGGTACTGGTGCAAATACAGAATATTTCCTCTAACTTCAGTTTCTAAAAATCAAGCactgaaaaaataaatatttgtattGAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328449 lncRNA downstream 96244 67678862 ~ 67680167 (-) False G289652
TU328450 lncRNA downstream 96244 67678862 ~ 67680167 (-) False G289652
TU328451 lncRNA downstream 96244 67678862 ~ 67680167 (-) True G289652
TU328488 lncRNA downstream 144599 67625400 ~ 67631812 (-) False G289677
TU328471 lncRNA upstream 113941 67900790 ~ 67915943 (-) True LOC110520458
TU328571 lncRNA upstream 137083 67923932 ~ 67924167 (-) True G289754
TU328574 lncRNA upstream 142622 67929471 ~ 67929673 (-) True G289757
TU328576 lncRNA upstream 144494 67931343 ~ 67931791 (-) True G289759
TU328584 lncRNA upstream 153927 67940776 ~ 67940975 (-) True G289767
XM_036975013.1 mRNA downstream 70190 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA downstream 70190 67685050 ~ 67706221 (-) False LOC110520454
XM_036975015.1 mRNA downstream 70190 67685050 ~ 67706221 (-) True LOC110520454
XM_021597782.2 mRNA downstream 139753 67617490 ~ 67636658 (-) True LOC110520453
XM_021597779.2 mRNA downstream 207713 67545597 ~ 67568698 (-) True LOC110520452
XM_036975011.1 mRNA upstream 49856 67836705 ~ 67881414 (-) False LOC110520455
XM_036975009.1 mRNA upstream 82551 67869400 ~ 67881414 (-) False LOC110520455
XM_036975010.1 mRNA upstream 82551 67869400 ~ 67881414 (-) False LOC110520455
XM_036975012.1 mRNA upstream 84066 67870915 ~ 67881418 (-) True LOC110520455
XM_021597794.2 mRNA upstream 113507 67900356 ~ 67916858 (-) False LOC110520458
TU328494 other downstream 142918 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 933530 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2195916 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2329128 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2475994 65298207 ~ 65300417 (-) True G286985
TU328453 other upstream 96903 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 419741 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 792254 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 839483 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 923518 68710367 ~ 68717385 (-) True G290598

Expression Profile