RNA id: XM_036975010.1


Basic Information

Item Value
RNA id XM_036975010.1
length 2447
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110520455
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67836705 ~ 67881418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCGCAAAATGTGATGCAGCAGAGATGCAATGACGCAGTCGATTCGAAGCGAATAAGCGTTTTCCTACTGGAGCGTTTTCTGGCAGCACAAACGGTGTCGGCTGCTTCAGCAGAAGAACTTACATTCAACAAAGGTACACATGTGATTGGAGGATGGAGGACTGTGGTACAGGGAGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCATAATTTTATGCTGATTGATCCCAATGGGGTTACTAAATTTATTTCACAGAATGGATTGACAGGTAGAGTCCAGTTTATTGGGAACCCATCAGAAAACCTTGGATCTATTAGAATAACTGCTGTCAGACTGCTTGATGAAGGCATCTTCACATGTATCTTCAGTGTTTTCCCCAGTGGAGCATACACTACAGAGATACCTCTGACTGTGCTAGTTCCTCCAGTAGTGAGTGTGACAGCTGATGTTGCTCCTGTCATTGGGGAGAATGAGGTTGTCTTGTCAACCTGCGTGGCTGCTGGTGCCAAGCCACAGGCAGAAGTGACATGGAAGACAGGTGAATTTGGCAGTTTGTTGAGGACGGTGACCAACTCCACCCAGCACACCAATGGCACCACCACAGTACTCAGCCACCTGCTCGGGGTACCAACCAAGGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAGAAGACCTACAACTACAGCATaaacatccactatccaCCTCAGTCAGTGAACATTACCCTTAGTGAGGCCTCTAAAGCCATAGTCTTCCTATGTGTAGCAGACAGCAACCCACACCCCAACTACACCTGGAGCAGagtgGTCCAGCCATGGCCTGGGTCTTCAGTGAGAGCTGAGGGAGACAAACTGCACCTCCTCAGTCTCAGCTCTGAGCTGAatggtctctatgtctgtctggcCTCCAACCCCTACGGACGAGCCACTGGCTCCCTCTATGTACACACATCCTCTGagACCTCTGCTGCCTGTTGGGTTCTACTCATTCTAGTCATTCTCTGTCTGATTGTTGCTGCGGCTGCACTCATATGGTACCGGTGCAAATACGAACAGTTTCCTTGGAGTTCATTCGTGGCCAAGGCACCAGAACAGactgtatcagtATCTTCCAAGACGAGGAGACATGACAAGGTTGAGGAAGGTGAAGATGTCTCATTGACTGCAACTGTCCAAACCAGGAAGGAgcctgaggaagaggaagaagtaTCATGATAACATTGGAAACCTCGACTCCATCACCTCTTCACCCAGTGCTGGTCCTCGTTTCAGATTTTTGATCCCCTCTCGTGGACTCCGCCTTGCCGTGGTTGAGGGGCTTTGCTGCTTCAGCGGGAACAACAACTCTCCTGTACAGtatgaatgtacagtatgtatgtacagtgctttcagaaagtattcatacccctggacttattccatattttgatgtgttgcagcctgaatttcaaatggataaaaaatatttttccacactcatctacacataataacccataatgacaaagtgaaaacatatttttttaaatgtttgcacatttattgaaaatgaaatacctaaatatctaatttacataagtaatcacaCACATAAGTCAATACATGCTAGAATCACCTTTAGCagtaagtctttctgggtaagtctctaaaagctttgcacacctggattgtacaatatttggacATTATTACAATTttttaagctctgtcaagttggttgttgatcattgatagacagccattttcaagtcttaccatagattttcaagccaatttaagtaaAAAGTAGGCCACTCCTGAACATGTAGTGTCGTCTTGGTACGTAACTCCAATgtatatttggtcttgtgttttaggttattgttctgctgtaatgggaatttgtctcccagtatctggaaatcagactgaaccaggtttttctctaggacaCTGCCTGTGCATAGCTCTATTCCATGTATTTTTATACAAAAAAAactccttgccgatgacaagcatacccataacatgatgaagccaccaccatgcttgaaaatacagTATGAAGTGTGGTTCTTTTCACTTTAGGATgcacgttttggaatatttttttctgTAGAAAGtttcctccttttcactctgtcatttaggttagaaTTGTGGAGtcactgcaatgttgttgatccatcctcagttttctcctatcacaccactaaactctgtaactgtttcaaAAACACAATTGGTCTaatgatgaaatccctgagcggtttccttcctcgactacggcaactgagttaggaaggacgcctgtatctttgtagtgactgtgtattgatacaccatccaaagtgtaatgaataacttcaccatgctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328439 lncRNA downstream 34215 67705034 ~ 67835185 (-) True G289649
TU328437 lncRNA downstream 49364 67705034 ~ 67820036 (-) False G289649
TU328532 lncRNA downstream 61143 67753300 ~ 67808257 (-) True G289716
TU328449 lncRNA downstream 189233 67678862 ~ 67680167 (-) False G289652
TU328450 lncRNA downstream 189233 67678862 ~ 67680167 (-) False G289652
TU328471 lncRNA upstream 19376 67900790 ~ 67915943 (-) True LOC110520458
TU328571 lncRNA upstream 42518 67923932 ~ 67924167 (-) True G289754
TU328574 lncRNA upstream 48057 67929471 ~ 67929673 (-) True G289757
TU328576 lncRNA upstream 49929 67931343 ~ 67931791 (-) True G289759
TU328584 lncRNA upstream 59362 67940776 ~ 67940975 (-) True G289767
XM_036965132.1 mRNA downstream 82551 67776411 ~ 67786849 (-) True LOC118944713
XM_036975013.1 mRNA downstream 163179 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA downstream 163179 67685050 ~ 67706221 (-) False LOC110520454
XM_036975015.1 mRNA downstream 163179 67685050 ~ 67706221 (-) True LOC110520454
XM_021597782.2 mRNA downstream 232742 67617490 ~ 67636658 (-) True LOC110520453
XM_021597794.2 mRNA upstream 18942 67900356 ~ 67916858 (-) False LOC110520458
XM_036963363.1 mRNA upstream 244189 68125603 ~ 68147765 (-) False nr1i2
XM_036963368.1 mRNA upstream 244189 68125603 ~ 68147765 (-) False nr1i2
NM_001124672.1 mRNA upstream 246926 68128340 ~ 68144764 (-) True nr1i2
XM_036975020.1 mRNA upstream 324916 68206330 ~ 68208663 (-) False si:ch211-214p13.7
TU328494 other downstream 235907 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1026519 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2288905 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2422117 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2568983 65298207 ~ 65300417 (-) True G286985
TU328453 other upstream 2338 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 325176 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 697689 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 744918 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 828953 68710367 ~ 68717385 (-) True G290598

Expression Profile