RNA id: XR_002472982.2


Basic Information

Item Value
RNA id XR_002472982.2
length 4591
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110520459
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67881416 ~ 67887339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactatactgatgcaggtaccttttgcAAATGGTCGCATGCAGTTGGGCACATGGAGGAGAGAATCATTTTTCGCAGTATCCTCAAAACCGTGTCTTTTTGACACAACTGCTGACAGCTACAGGGACATAAACACAAAAATGCTGCTTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGGTCAGTTTACTAGTGATGTTGTGCTAGATGTGGCTagttagcgttagctagctagctaacctagcCAATGAGGTGTGTGTGAAATAAATAGTCAAATAAATTATGCTAGTTACTACCCCTGATAACTTTACCAAATAATCATGTTTGAAAGAGTGAGAGTGTTTATTCTAGATAAATAGCAATAGAAatggtagatactactgtacccctgataatttggtcagataaccgtgtgtgtgtgtgtgtgtgtacagtaggtgACATGTCCATGATAGCTATCTAATAACTATAGTTATGCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGACcggtatcagagagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCCTTGGCGCTTCTGCCACATTCTTTTCTGGATCCATTTATTGTGCCTAGGACAACGAGTGGCAATTTTACAGCTAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGTGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCGCCTCCACCGGTGGAGTGAGACCCTCTACAACATCTACATCATCCACGAGTATGACCACCACTGGTGCAGCCATGGAAGATGATGAAATGGAGGAATCACCTCTGGATCTAGGACCACCTGAGATTATTATGAACCTCACGGAAGTGACCACTGAGGACCTTGTTGAACAGGATGTGGCCGTGGAGAGAAACGAATAGGAACATCACACCAGGCGTCATCGGAGGTACCAGATCCACTCAACTAATTTCAGCAGAGGCTCCTCCAAGCCGTCGAGAGGGATGCAGCCCAACCTGATGCTCACTGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCTTGGTGCCAACACTGAAGAGGCTGCCTCAGAAAAGAAAAGCAACAGTCAAGGTTAAAATGTATCAGCTGATTTTCGAAGCTGAGTTCAATGAAATGGAGTCAATTTAGCCGACCAGCTCacaggaaggacaggaagaggacaggAGTTGTCTGGCTGTTGTTTTGACCTCCCTCGTTGTACCTTTCTTTTCACACACACGTCAGTTCTGtttaaattcagtcaattcaTAAAGTCATTTGTTTATAAAGTCTTAGGACAGCATTCATTATTAGTGTTACATACATTTCTGAATTGAAACTCATACAGAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAGGTGAATATTTCTTTCATTTAAAACCACTTGAAAACCAGGGTGTTGAAACTGTTTGTGAAGTTATGTTCCATCGACTGGTCCATGACGTCCAGAGGCCATTTGTTTGTTTAGCTGTGTTATGGCTACATATTATTCCCTTTTTCCCAGagaatgagacacacacacactctcctctctgtacCTCGGATCTCCAGTGCCCTGCCCTCTCTCTTTATGGCCATGTCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTcataacaaataaaaatgtacacgcacgcacacacctctttcaatagttttatttttttaaacatttttacaaCACACATACCTGTCATGTTCCTTCCTGTACTTGAATACTTATTAAATTATAATGTTTTCATAGTCAGTTGTTTATTAATATCTAATTTAGACTTAATCTGCTTATTTCTTCCCTACACCTTTGCTGATCTAAGACAATATGAAAGTAAAAACATCCAGCATAGGGCCTCATGAGGTTGGGTCTTAAAGGGAAGGCCTCATCGCCGACGAAGACGTGGGGAACAGGTCCCAGGTCTTCAGCCCCAGGGAGTGATGCAGGTGGTGGAATATCCAGGGTGCCATCCTGAAGTGCCTGGCCAAAGGCAGAGTCTCGGAGGGTCCCGCCATCACTTCCCTTGCCGTAAGCACCAACATCGACAACACGGAAACAGTAGATGGCATCTACCACAGCCAAGAGTACAACTGAATATGTACCCTTGTAGTTGTAGAATTGCGAACCTGAGCACGGTGGAGCCTGGATTACTACATGTTTCCCGTCAATGGAGCCAAGACAGTTGGGGAAATTCCACCTCTCCAGGAACTCGGCAGCGATGGCCCTCCAGTCTTCCTCCTTAAGGACAGGCATGTATTCACCAGCCAGACACTCCCAAATGGCTTGCGCCACAGAGGGGACAATGCCTGCCACCGTGGACCGTCCAACTCAGAAGCTGAATCCTATGGTCCTGTAGGAGTCCCCTGTTGccaagaatctaaaatataattaaAAATAATGATCAATATTGTGTATAACTTTAATTCCACCCACATATTATATCTACTCATATAGCTACCTCATTAATGTTTATTATGCTTTACTAATTATATTGTAATACTCATCAACCATCATTAACAATGCCTTGAAACAGTACAATTCAGTCTATGACTATATCAATAAACTGTAGTCCAGGCCAACTCTACTCTTAGAAAGAATGGTACTATCTACTTACAGGGTTCTCtggctgtcccaataggagatcccttttaggttctaggtaCTACCCCTTTTGGTTCCGAGTagaaccctattgggttccatgtattaagtgttatacctggaaccaaaaatggttatcaTATGGGGAAAGCAGAAGGACACTTTTGGAACCTTTTTCTCTAAGAGTGTATGTGAGTCCAATAAGAATGTAATGAATGACTGTAACTGTCTTGAACAACAATGGGTCCTGGAGAAGACTAGCCTACCTTCATCAGGGCAGAAGgtgttatgggtgtaagatggcacagtgatgccatctgttggtaaatgttcattactgcaactcttgtgttttaccggggtgcttgagatacccggatgtgttgtgatgtactgaacaagactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacatGGTGTCAGAGTCGGATAACTAACCATGCTTTCCGCAAATTAGAGTCACCTGCTCTGGTTTACAAACAAATGCTTATTTGTGTAAAATTTCGCCCGGAATTGGCCTTAAGCTAGAGTGAGTTTGCTAGTTAGCTTCAGTGTTGTTAGCACCGGTTAGACATGGCAGCGAACATTCCCCCTCCCGCCGTTATGAAGCTCAGCGGGGATTGGAGCACGAACTGGGATACGTTTAGAGGTGAATGGGAGGACTACGCGCTAGCAACGGGACTTCTGGAAAAGGAAGATGAGGTAGTGGCTGCCACTTTGAGGACTATAATGGGAACTGAATGCCGACACgtatacaaacacaacctgaaccTAACAGCAGCACAGCAAGGTAACGCTATAGCTATTCTTGATGCTCTTGAACATTACTTTACGCCAGCAAAGAACGTCATCTACGAGCGTTATGTTTTCGGTCGTTGCAAACAGGAGGACGGGGAGTCCATTGACAGCTTTGTCACTAGGTTAAGGGAAAATGCAGCTACATGTGACTATGGTGCTTTAAGAGATGAACTGATCAGAGATACGATTGTGCTTGGCATAACGGATGAAGGCACCCGCAGACGTTTGCTGAGAGAACGTGACCTGAACTGTCTTGAACAACAATGGGTCCTGGAGAAGACTAGCCTACCTTCATCAGGGCAGAAGGCACCGTTCTTTTCATTTGGTAACATTACATAATTGAAAAAGGATTATAAACCAACTTTGGGAAAAGTTATAGTCCCAATGAACATTCTGTAAAAGTACATCTGATGTCAAATAGGGACTATTAACTAGAGCcctttagctagctaggttgcaCATAAAAACAATGTGTCAAATATCAATCAATTATGGTATCAAAGGCTTTAAAAATGTACTAGAATGTAGCTTACCGAAGACAAATTGGCAGGCGTTCAACTGGGCTGATGGACTCCCGGTAGTTGGTATCCATCCAGTGATCCTGGCTCCAACCATCTGGAGCAGGTGATCGAACTGGCTTCGGTCCAGACGAAAGTAATTTCGGAATTCCTCTCAAAACAGTCGAAGCTCTTGAATTAGACAGTAGAATTCCCCTGCCTGCTTTCGGGACTTTAACCATCTCTGGATCCACACAGACCTGCGCTTTCGGCGGGGCTGGTCCCGGTCCAACAGTGCGATCAAGACCACCTTCCTCAACGTTGATCTCATTGTTGAAAGAGCCTACTCTGCTATCTTGACTATTTATTATTGCATTTCGCTCGAAAATTGCATTTTGGAGGGAAATTATATTATAGGCTCTCACAATTAATTTATGGATGTCATCGAATAAATAATATACTtggtaaataaaataataatacatttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328279 lncRNA upstream 6629 67872793 ~ 67874790 (+) True G289521
TU328314 lncRNA upstream 45391 67827434 ~ 67836028 (+) True G289544
TU328302 lncRNA upstream 61492 67819485 ~ 67819927 (+) True G289536
TU328287 lncRNA upstream 97854 67783144 ~ 67783565 (+) True G289523
TU328286 lncRNA upstream 98807 67781933 ~ 67782612 (+) True G289522
TU328335 lncRNA downstream 14342 67900738 ~ 67916438 (+) False G289563
TU328336 lncRNA downstream 14342 67900738 ~ 67915607 (+) False G289563
TU328334 lncRNA downstream 28683 67915079 ~ 67916438 (+) True G289563
TU328345 lncRNA downstream 33303 67919699 ~ 67919965 (+) True G289572
TU328347 lncRNA downstream 37933 67924329 ~ 67924593 (+) True G289574
XM_036965127.1 mRNA upstream 147373 67726893 ~ 67734046 (+) False LOC118936465
XM_036975008.1 mRNA upstream 278187 67599901 ~ 67603232 (+) True LOC110504522
XR_005051361.1 mRNA upstream 358702 67521558 ~ 67522717 (+) False LOC118964316
XR_002470759.2 mRNA upstream 361257 67519370 ~ 67520162 (+) False LOC110505416
XM_036975003.1 mRNA upstream 377195 67461754 ~ 67504224 (+) True LOC110520450
XM_036975016.1 mRNA downstream 58482 67944878 ~ 67980956 (+) True LOC110520461
XM_021597797.2 mRNA downstream 95935 67982331 ~ 67989941 (+) True lrrc58b
XM_021597798.2 mRNA downstream 115909 68002305 ~ 68037956 (+) True LOC110520463
XM_036975017.1 mRNA downstream 171719 68058115 ~ 68114677 (+) False LOC110504531
XM_036975018.1 mRNA downstream 171719 68058115 ~ 68114677 (+) True LOC110504531
TU328273 other upstream 118996 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 199297 67678862 ~ 67682122 (+) False G289486
TU328193 other upstream 249209 67625353 ~ 67632210 (+) False G289455
TU328195 other upstream 249209 67625353 ~ 67632210 (+) True G289455
TU327812 other upstream 361449 67519326 ~ 67519970 (+) True LOC110505416
TU328723 other downstream 337329 68223725 ~ 68225306 (+) False G289883
TU330151 other downstream 1739947 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 1808999 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 1975664 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 2032786 69919182 ~ 69922119 (+) True LOC110504602

Expression Profile