RNA id: XM_021597794.2


Basic Information

Item Value
RNA id XM_021597794.2
length 1775
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110520458
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67900356 ~ 67916858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCtgttctccatcctcctcagacTACCGAAATGTTCATGTCCCGCTCTCTCTGAGTGTTTCCTGGTTAGCTAGCTGTGACACTGATCTCAGACTCTGACGTTCCACTCCActctgtccatttctctctctgtcaatcagCTATGTCTAATATCGTCATGGAAACTCTCCTGTCCTGGGACCTGGTGTCTGTGGTCATCATGCTGTTCCTTGTCTCTACAGGTGACTCAACAAAATATCAGAAAAATAAATCAGCTTCTTTGGGAGAAATTGTTACTTTGGTTTGCAATAACTCAGAGACGAATGCATCATACATCTGGAAGAAGGATACAGTTCTTATTTTCTCTCATAGTGACAAACTGAATAAAACTGAAAGGAACATCACCTCTGACAGGATGAGTGTTGATCCACCTACAAAGCTGACTATCTTTAATGTAGAGTTAAATGACACCGGGAGCTACAGCTGTCAAATAACAGATGATCAACGTGGTGTATGGAAAATGGAGTGGAATTTGACCATCACTAATAACCTCACAGGTCATGCTGAATATAACCTACGGAGGTTATTGCTCTTCACAATTCCATCTGCTATTGGAGGAGGGGTTCTCTGCATTAACATCTGTTGTATGGTCTGGCTGTGTAGGAAACGAAAACAGGAACAGAAAAGTCATTGTGATAAGCACGGAGAGGAGAGCAATGCACAGTCTGATGGTCACACTGCCAGAAGAGAACAACACCAGTGCAGTCAATACTTTGAAAGACTCAACTCAGTCTATGGACTGTAGTAATCACACAGCAGTTACTTAACATGCCAAAAAAGAGTCAAGTATCATAGACGGGTTAGCTGACAAGGTCACGACAACAAAGCACATGCTTCAATGAGGAAGAAGTCCATGTGTAGTTGTGGTTCTGGATGACCAGATAACTAGCAACATTGACAAGAAGCTGCTATGTGGGAATCTTAGGTGGTTCGTTTCAGCTTGTTGTGTCTAGTTAGTGATACTGTGATGGAACATTTTCTGTTTGTgtttttctaataaccaatttctgtgctcatgcaagtgactgattgaacaTGCAGAGgaggaatcctcactatcagtatgcaatttggcagtacaccCAGAACCGTGTTTTGAGAACTAAAGGGATATCttagtttcaaggtctcagcttggagAGAGGAAGCCTCTTAAggtattggtcagtcacatgcATGAACCAAACGTTAATGATGAATTAATGATGAATAATGAATAAGCCAAaccatgcaaatataacttgtctgtgtgaGCAGTATATAAGAGAACTAACGGGACTGGCCCGGTGAAGCTCACTTCAGACCGACACTTTATGCATCTCCGTTTGACTGGGACGTCTTCAGCGTGCTGTAAATAAACAATgcttcatttaagattgacttcaaGTGTCCCTGTGTAGAATTTCCATGACAATGCCATATCTTGTTTTGAAGTGTTTTGACACATCTAGCTAATATGGCAAaaatgtgctagctagctaaacaacaaCTGTAACAgcgtatttgagagacaacaagtgctcaatgtgcaaatgtatttatgtttccaatggtaacactttacttgacacccagcggcATACCACGTTATGACACcctcataaccatatcataatatgtcataacaacTGACATAACGTGTCATATCCTGTCAttatatggtcataacactgtcatgacacatatatgtacacctgttgtgacatatattgcattattttatggctggttggTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328432 lncRNA downstream 18978 67705034 ~ 67881378 (-) False G289649
TU328439 lncRNA downstream 65171 67705034 ~ 67835185 (-) True G289649
TU328437 lncRNA downstream 80320 67705034 ~ 67820036 (-) False G289649
TU328532 lncRNA downstream 92099 67753300 ~ 67808257 (-) True G289716
TU328449 lncRNA downstream 220189 67678862 ~ 67680167 (-) False G289652
TU328571 lncRNA upstream 7074 67923932 ~ 67924167 (-) True G289754
TU328574 lncRNA upstream 12613 67929471 ~ 67929673 (-) True G289757
TU328576 lncRNA upstream 14485 67931343 ~ 67931791 (-) True G289759
TU328584 lncRNA upstream 23918 67940776 ~ 67940975 (-) True G289767
TU328585 lncRNA upstream 25192 67942050 ~ 67942284 (-) True G289768
XM_036975012.1 mRNA downstream 18938 67870915 ~ 67881418 (-) True LOC110520455
XM_036975011.1 mRNA downstream 18942 67836705 ~ 67881414 (-) False LOC110520455
XM_036975009.1 mRNA downstream 18942 67869400 ~ 67881414 (-) False LOC110520455
XM_036975010.1 mRNA downstream 18942 67869400 ~ 67881414 (-) False LOC110520455
XM_036965132.1 mRNA downstream 113507 67776411 ~ 67786849 (-) True LOC118944713
XM_036963363.1 mRNA upstream 208745 68125603 ~ 68147765 (-) False nr1i2
XM_036963368.1 mRNA upstream 208745 68125603 ~ 68147765 (-) False nr1i2
NM_001124672.1 mRNA upstream 211482 68128340 ~ 68144764 (-) True nr1i2
XM_036975020.1 mRNA upstream 289472 68206330 ~ 68208663 (-) False si:ch211-214p13.7
XM_036975019.1 mRNA upstream 289472 68206330 ~ 68208674 (-) False si:ch211-214p13.7
TU328453 other downstream 14124 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 266863 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1057475 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2319861 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2453073 65446825 ~ 65447283 (-) True G287042
TU328904 other upstream 289732 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 662245 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 709474 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 793509 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 804950 68721808 ~ 68724914 (-) True G290602

Expression Profile