RNA id: XM_021597813.2


Basic Information

Item Value
RNA id XM_021597813.2
length 2561
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110520470
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68455461 ~ 68460579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatcagTGGCAATACCATTTCTAACCCATCAATGTGCTCTccccctcccatccctctccttctaGATGGTATATAAGCCCTGGCTGTGCTCGCAGTACTTCCAGACCACCCAGATCCACTGCAGTAAGAGGATCCCGTGTGGCCAGTACTGTCTGGAGGTGCAGCAGAGGTGTCCCTTTATCCTGCCTGACAACGACGATCTCATCTATGGAGGAAGTCCCAGTTTTATATGCACAGGGCTGCTGGAGGAGTACCCTGGGGGTGTAGAGGCAGAGTGCTGTGATGTCCGGTGGGACTTCAAGATGGAAGCAGACAACAACCGTTCTCGGGGGACCCTCAAAAGAACTCACCCATCCTGTCTTCACCGAAGCTCTCTCAGTTCCTCGGCCGCGTGCAGACTGTGCAACAGCCGGCTCAAACTCTGCCTGCTTGTCCTTGTCCTCCTGCACACTGTTGCCTCCCTCACCGCATCCCACAATGCAACGGGAGTGGGCTTGGGTCTTCCTGCCTCCCTCACCCCTCTGGAGGAGAGTTCCCCCACCAACGAGGAGTGATGGGATGGCTGAGGACCTACGTTGTCATGGCAACAGCATGGCTATGAGGATTTGAAACATCTCTGCCTTGGTCGGGAATGCTAAGTGCTGTGGACTTGACATCTGCAGCCGTCGTGCTTTCTGGGTAATGGAGTCTTTGCTGAGGTTTGGGACTACTTGGAGACATACAAATCaatcaaaacaaacaaacaaacaaacaaagagaAAAAAACCATGACTGTGGTGGGAATGTGGGACAATGCCACAGTCTGACTGTGAAGGCCTCCTCACTGCTGAGTTTCTCTCTGCTCTTTTTTTACACTGTGTTCCTGTTCTGGCTTTTTGTTGCACTGGCTGACTACGGGATAACATTCACTCTCCCTCTTTTTGAATTTCCATCCTTTATGTTTTATGATGTTCCTTCCTTTCTCTTGCACAGGAAAATGTCTCATCGATATAGGATAGGTAACATGTATCAAAAAGCAAagttgtgagtgtgtgcatgcttgtgtgtgtccaCTCTGAAGTCTCCCCTTATTTGGGTTCCCATTCCTAAAGATTTTTTAGATGTAGGAAAGGACTGTAAAATGTTAGTAGTAATTtgttctcatgttctctctcacaGTATCCCTGGTAAAGTTAACACACACCCACATTTCATCAGATTACACTACTGGCCAATCTCTCAATATAGAAGACAACCCCTAGATATACGAATATTCCACTCTGAATTCTGTCCCTACCACACTGTTCATTCTCTATGACATCTTCTCAGTCCAGCACTCAACACAGGAGGTGTGATGTTCTATTTtctgtttattgttttgtctaATCAAGATGTGTAAACTCTATTCTGTACTTGCATGTGGAGGCTCTCTTAAATTATGTGAAATTCACGGCCTTGTTGGTTTGCTTTGCGTAGCCTTAGCCATGCTGTGTTACAGAACACTACTGCACCCCCAAAAGACCACCAGTATGGTATCAGTGTCTTCTGTGTTTCACTGCATTGTTCAGAAAATGTTACTTAAATCTCACATTAAGTAAAGGGCTTATTGCTATGTACATATATTCACACATCAAAGACGTATGGCTTAAGGTATCTCATTTGACACTGCATGCTTAGGGGTACAACTTCAAAGGTAAGCATTTGCTTACAAGGCGGTTCATGCTTTGCTATAGAGAACGGGCAGGTGTAGGACCCAGTATGGAGAATGTTTGAGGAGAAACGTTGGGCGGCAGAGAGGTTGAGAAGCTCAGCGGTAGATGTTAGCATTGCTGTTCGCATAATAGTTAATGATAGCTGGAAGAAAAGGAAATATTTAAGGGCTGTTTATATTCTTTGTCCCGTTTTCTAGATAATGAGCTGATGGATAGGTGAGTCAGGTTCTGATAGGTGGGTCATTGTGAAGTCTGTCTGATGTTTACTTGTTGTCTCACTCATATTCATTACGCATTCACAACCTCCGGGAGAGTTGGGGAATATGACCTGTAAACTCGGAGCAACGAGGTGTGTGCGTTCACGTGCTTTAAAACTGGTTGACACATTAATTCACTAATTAACAGCAAACTAGTTACCTTAACCATAAACCAAAAGTAGAGCTATCGCGCTCATAAACAAATTATAgtgttaaaaatacatttttgtggTTGCATTTAACAGGCAAAATGCTGTCATCGAAGTAATTTCCTTAGGTGACGTCACAGTTCAGAATGTCAGAGGTGTCGGGGTCCAAATCAATACAacaataccttacagtgaaaagtgtacttacaagcccttaaccaacaatgcagttttaataaGAATAAGTgttaaaaaatgatttactaaataagataaagaaaattaacaaaaaaattaaagagcaacaataaatgaacagtagcgaggctatatgcaggggttaccggtacagagtcacttGTGCGGTGGCACAAGTTAAGGTaattaggtaatatgtacatgtactgtaggtagaggtGAAGTTACCATGCatagacaacagagagtagcagcagcgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329336 lncRNA downstream 2679 68451802 ~ 68452782 (-) True G290443
TU329335 lncRNA downstream 6404 68448646 ~ 68449057 (-) True G290442
TU329347 lncRNA downstream 19383 68435835 ~ 68436078 (-) True G290454
TU329104 lncRNA downstream 56094 68398958 ~ 68399367 (-) True G290226
TU329103 lncRNA downstream 59219 68396043 ~ 68396242 (-) True G290225
TU329371 lncRNA upstream 9979 68470558 ~ 68470784 (-) True G290477
TU329389 lncRNA upstream 36656 68497235 ~ 68497484 (-) True G290495
TU329390 lncRNA upstream 37053 68497632 ~ 68497870 (-) True G290496
TU329395 lncRNA upstream 42991 68503570 ~ 68503773 (-) True G290501
TU329403 lncRNA upstream 49805 68510384 ~ 68510739 (-) True G290508
XM_021597811.2 mRNA downstream 162711 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 162712 68278572 ~ 68292749 (-) False LOC110520467
XM_021597804.2 mRNA downstream 202220 68227272 ~ 68253241 (-) False LOC110520466
XM_021597805.2 mRNA downstream 202220 68227272 ~ 68253241 (-) False LOC110520466
XM_021597806.2 mRNA downstream 202220 68227272 ~ 68253241 (-) False LOC110520466
XR_002472988.2 mRNA upstream 123893 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 799924 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 919888 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1135258 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 1180687 69641266 ~ 69644739 (-) False LOC110520480
TU328904 other downstream 247066 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 569229 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 821968 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1612580 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2874966 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 118524 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 165753 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 249788 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 261229 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 386032 68846611 ~ 68850854 (-) True G290713

Expression Profile