RNA id: XM_021597820.2


Basic Information

Item Value
RNA id XM_021597820.2
length 1756
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110520477
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69595837 ~ 69614655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgctgcgtaaattctcctaaTATTGTATGTAAAGATAAATCTGACATCAATTTtacaaaagctggatcccttctagccatgaccctTCAAGCTTTTAAATCAACGTCCGGTTTCATCACAATTTTTGAAGTTCACTATCAACAAGTggacgagagagagggaagagctgTGGTCGTCTAACTTGAAGTGTTTGTTATATCGAGATGTTGATTGTATAATCGCTTGAATTATATCGAACACCCAGGACGATTTCAGTGGGTTTTAATCGGTTGATGTCAAGATGACAATTGCACTTTATCTGTAAACTAGTGCTTTTAAATGAAAGTGAAGTACAGCATCGAGTGTGTCTCTGCTAGACCGCTGAGGAGGTTTGCCAAGCGGCGTGGGTCAAGAACCATGCCCGAACTTTCCAAGATGAGGAAGCCTGACGTCAAAGTTGTCATTCTGGGCGACATGAACGTTGGGAAGACCTCGCTGCTTCACAGGTACACGGAGAAGAAATTTAAAGACACCATCAGCACCGTCGGAGGGGCGTTTTTCCTCAAACAGTGGGGACCCTACAATATCTCCATTTGGGACACTGCTGGTCGGGAGCAGTTCCACGGGCTGGGCTCCATGTACTGCCGGGGCGCTGCTGCTGTCATCCTCACCTACGACGTAACCAACTGGCAGAGTCTGGCTGAGCTGGAGGAGCGCTTCCTGTCCCTGACCGACACTGCCAATCACGACTGCATCTACGCCATCGTGGGCAACAAGGCCGACCTCACAGACCTCCAGGCACAGGTGGGAGCCACCCAAGACGGCCTAACcgaggaccagggagaggaggacggggAGAGGCCCAGGGTGCCTTCTGCCTGCCCCACCCCTCCAGCCTCTCCAGTCTCCCTGTCGGGGGTGTCGGTCAACAAGCAGGTGAGCCGGGAGGATGCAGTGGCGTTGTATGGGAGGATCCTGAGATACAAGGGTATGGAGGAGACTAACAGCCTGCCTGCTGACAAGATGTGCTTTGAGACCAGTGCTAAGACGGGCTACAACGTGGACCCTGAGGCGCTGTTTGACATGGTGCTGCCCTCCATCATCAGgaagaggactgagagagagggatcacCCACCGTGGACCTGGATGAGTGCATCGGGGCAGGGAAACGGCCAAGGACCGCCTGCTGCTAGGGACTACCGAGTTTTAGACTGATCGTAAAGAGGAGTTTTCATGCCATCTCCATGTTGCTCTCCAAAAAGATTTGTCAGCATTGACCGATTTTTGATACACATACTTTCAAGCAATCaatcaaacatattttttttcttccaatgAGATGCCAAGGATTGTTATGGAGTAAGAAGGAGTTGGATCTCTGAGGCTCTGATATGCATGTAATTGAGTTCTGGCCAAAATGGTGTGTAGTTTGTAAAATGGACTGTTTAGAAATCAATCACATATGATTATTGTCTTGAATGAGAATGTCACATGCCTTTTTGTTCAACAGCACGAATTGTTTGACTACCAGGGTGGGCACATTTGAATTGTGTAAAATTAATCTTATTGTAAGgatgtttttaaatgtttgttaAACAATCAGCTTTGTTTGCATTTGTACGTTCTGTTGCATGTTCATTTTTATtacatccttttttttttttcatttgcaCCTGATCTACACTGGACAATGTGCATTTATATGGAAGACATTTTAAACGTGCTTGATATTTTCAAAGATGATACGATAATAAAGATTCTCATTTTGAAATTG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330708 lncRNA downstream 1759 69591159 ~ 69594078 (-) True G291661
TU330675 lncRNA downstream 87890 69499580 ~ 69507947 (-) False G291631
TU330676 lncRNA downstream 87890 69501096 ~ 69507947 (-) True G291631
TU330663 lncRNA downstream 114893 69480509 ~ 69480944 (-) True G291622
TU330645 lncRNA downstream 156262 69439163 ~ 69439575 (-) True G291604
TU330709 lncRNA upstream 25178 69639833 ~ 69640694 (-) True G291662
TU330704 lncRNA upstream 26559 69641214 ~ 69644698 (-) True LOC110520480
TU330812 lncRNA upstream 99575 69714230 ~ 69714857 (-) False G291749
TU330813 lncRNA upstream 99575 69714230 ~ 69716414 (-) True G291749
TU330820 lncRNA upstream 113578 69728233 ~ 69729053 (-) True G291755
XM_036975027.1 mRNA downstream 126139 69380467 ~ 69469698 (-) True LOC110520476
XM_021597817.2 mRNA downstream 318561 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 1009095 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 1135258 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 1303087 68278572 ~ 68292750 (-) True LOC110520467
XM_021597827.2 mRNA upstream 26611 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 34882 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 37878 69652533 ~ 69675008 (-) True ankrd10b
XM_036975031.1 mRNA upstream 83810 69698465 ~ 69709126 (-) False otc
XM_036975032.1 mRNA upstream 83904 69698559 ~ 69709169 (-) True otc
TU330123 other downstream 339293 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 744983 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 870923 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 878452 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 948217 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 365691 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 492885 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1105381 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1412964 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2288659 71903314 ~ 71903908 (-) True G293984

Expression Profile