RNA id: LOC118964360


Basic Information

Item Value
RNA id LOC118964360
length 154
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC118964360
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69676510 ~ 69676663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTGTACTGAAATCAGTAGCCCTTCACGGACATATCACCCAGGGTGAGGATCAGCAATTGCACTCCGATTGACCGCTACGAATTTCCCAAATGTggaaatctcaatttaatcatttctgctagtgtgggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330148 lncRNA upstream 34480 69563664 ~ 69642030 (+) True G291163
TU330267 lncRNA upstream 139252 69534421 ~ 69537258 (+) True G291274
TU330249 lncRNA upstream 169032 69499548 ~ 69507478 (+) False G291261
TU330252 lncRNA upstream 169032 69503869 ~ 69507478 (+) True G291261
TU330168 lncRNA upstream 358325 69317897 ~ 69318185 (+) True G291182
TU330320 lncRNA downstream 17352 69694015 ~ 69694249 (+) True G291326
TU330330 lncRNA downstream 23085 69699748 ~ 69701720 (+) False G291331
TU330329 lncRNA downstream 24689 69701352 ~ 69701720 (+) True G291331
TU330353 lncRNA downstream 43345 69720008 ~ 69720786 (+) True G291345
TU330361 lncRNA downstream 63875 69740538 ~ 69740934 (+) True G291353
XM_021597825.2 mRNA upstream 35787 69634580 ~ 69640723 (+) False LOC110520479
XM_021597826.2 mRNA upstream 35787 69634850 ~ 69640723 (+) True LOC110520479
XM_036975028.1 mRNA upstream 41207 69625762 ~ 69635303 (+) False LOC110520478
XM_036975029.1 mRNA upstream 42238 69625755 ~ 69634272 (+) False LOC110520478
XM_036975030.1 mRNA upstream 42238 69625759 ~ 69634272 (+) False LOC110520478
XM_036965146.1 mRNA downstream 35685 69712348 ~ 69731657 (+) True LOC110504569
XM_036975033.1 mRNA downstream 55096 69731759 ~ 69769646 (+) True LOC110504579
XM_021597835.2 mRNA downstream 185231 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 185359 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 185359 69862022 ~ 69870212 (+) False LOC110520485
TU330151 other upstream 46141 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1451204 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1914087 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 1994388 67678862 ~ 67682122 (+) False G289486
TU328195 other upstream 2044300 67625353 ~ 67632210 (+) True G289455
TU330321 other downstream 18732 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 185397 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 242519 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 273004 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 380877 70057540 ~ 70070357 (+) True LOC110520493

Expression Profile