RNA id: XM_036975032.1


Basic Information

Item Value
RNA id XM_036975032.1
length 1473
RNA type mRNA
GC content 0.48
exon number 11
gene id otc
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69698465 ~ 69709169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCTGCTCACGTTGTGGTTCACACCAAACACGTAGTGACGTGAGTGGGCAAAAACGGTGAAGGAGGAGCGCCCCACATCGGACAGTAATCAGCACAATTCCGGAGAAGAAAAAAAGTTAACCTACCCAATCTATGTGCGATATTTGATATCGATTTATAAAATTATAGTAGTTTAATCTGTCATGACAACAAAAATACTTGCCATGAAGAATTCAGTGTTCTACGGACTGAAGACTCTCCAAAGCATCCATGCGAGGAATTTTAGCATTGGAGCACTAGCTCTGGGTCCGGTCAACCTCAAGGGTCGCAGTTTCCTGACTTTAAAAGATTTCAGCTCAGATGAGATCAAACATCTTCTATGGGTGTCAGGTGACCTAAAACACAGGATCAAACATGAAAAACAGTACCTTCCTCTTCTTCAAGGGAAGTCAATTGCCATGATATTTGAGAAGAGGAGCACCAGAACTAGAATGTCCACAGAAACAGGTTTTTCTCTGCTGGGAGGACACCCCTGTTTCCTCACGTCTCAGGACATCCACCTGGGAGTGAACGAGAGCAGCACAGACACAGCCAGggttcTCTCTGGGCTGTCAGACATAGTCCTGGCACGGGTGAACAGCCACACTACTCTGGAGGAGCTGGTGAAGGATGCCTCCATCCCCATCATCAACGGCCTGTCTGACCTCTACCACCCCATCCAGATCCTCGCTGACTTCCTCACCCTGCAGGAGCATTATGGTTCGTTGAGTGGGCTGACTATAAGCTGGATCGGAGATGGAAACAACGTGCTGCACTCCTTCATGATGACCGCAGCCAAACTGGGTGTCCATCTTAGAGTCGCCACGCCCAAGGGTTATGACCCAGACAGCAGCATCATTCAGGAGGCACAGAGACTCTCCAAACAGCATGGGACCCAGTTTCTCCTGACCTCTGACCCAGTGGAGGCAGCTCGAGGCAGTAACGTCCTGGTGACAGACACCTGGGTCAGCATGGGCCAGGAGGAGGAAAAGAAACAGAGGATCAAGGACTTCCTTGGCTACCAGATCACCATGCAGACAGGAAGTGTGGCAAAGCCAGACTGGACCTTCCTTCACTGTCTCCCACGGAAACAAGAAGAGGTGGAcgaccaggtgttctactcccctcgCTCACTTGTCTTCCCTGAGGCTGAGAACAGGAAGTGGACCATCATGGGTCTGATGGTCTCTCTGCTGACTGACTACTCCCCCCAGATCCCCATGCCCAGATTCTAACTCTATCCCTACTTGCCAAAGGTATCCTAAGTTAACAGTTTTGTAATACTACAAAACAGCGCTCGGTCAAGTACTTGATTGACTTTGTAGTCTGCCAGGTACATTGGAGCCTGTTTTAAAAGTGCAAACTTAAAATGTGCACTTAATGCATGAAagtattttacaaatgtatttgAACCAGGACTGAATCTGAGAGAATAAAAGCTTGTTTCTTTGTA

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016743 carboxyl- or carbamoyltransferase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330704 lncRNA downstream 53861 69641214 ~ 69644698 (-) True LOC110520480
TU330709 lncRNA downstream 57865 69639833 ~ 69640694 (-) True G291662
TU330697 lncRNA downstream 98850 69522755 ~ 69599709 (-) True G291652
TU330708 lncRNA downstream 104481 69591159 ~ 69594078 (-) True G291661
TU330676 lncRNA downstream 190612 69501096 ~ 69507947 (-) True G291631
TU330812 lncRNA upstream 5061 69714230 ~ 69714857 (-) False G291749
TU330813 lncRNA upstream 5061 69714230 ~ 69716414 (-) True G291749
TU330820 lncRNA upstream 19064 69728233 ~ 69729053 (-) True G291755
TU330827 lncRNA upstream 24151 69733320 ~ 69733532 (-) True G291760
TU330830 lncRNA upstream 29340 69738509 ~ 69738762 (-) True G291763
XM_021597828.2 mRNA downstream 23549 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 23551 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 53820 69641266 ~ 69644739 (-) False LOC110520480
XM_021597820.2 mRNA downstream 83904 69595837 ~ 69614655 (-) True LOC110520477
XM_036975027.1 mRNA downstream 228861 69380467 ~ 69469698 (-) True LOC110520476
XM_036975037.1 mRNA upstream 66463 69775632 ~ 69814808 (-) False sytl5
XM_036975036.1 mRNA upstream 66463 69775632 ~ 69860999 (-) False sytl5
XM_036975034.1 mRNA upstream 66463 69775632 ~ 69861000 (-) False sytl5
XM_036975035.1 mRNA upstream 66463 69775632 ~ 69861001 (-) True sytl5
XM_021597838.2 mRNA upstream 166753 69875922 ~ 69903855 (-) False xk
TU330123 other downstream 442015 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 847705 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 973645 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 981174 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1050939 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 271177 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 398371 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1010867 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1318450 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2194145 71903314 ~ 71903908 (-) True G293984

Expression Profile