RNA id: XM_036965146.1


Basic Information

Item Value
RNA id XM_036965146.1
length 5602
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110504569
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69712348 ~ 69731657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATAATCGAATCCGCAGATTGTTTCTGCGGAGGAATGTGACAGGCACCTGTGAGGTGAGCCGACACCAGGGGAGAGATGACCGGGCAGACGGAAGATGATATACCTGAAACAGGAGCAATCTTCACCTTTGGGAAGAGCAAGTTTGCTGATAATGTGCCCAGTAAATTCTGGCTGAAGAATGACCATCCAGAAGAAATCTCGTGTGGGGGTGATCACTCTGCTGTCGTAACAGGCCATAGCAGGCTGTTCATGTTTGGAAGTAATACCTGTGGTCAGTTAGGGCTGGGGTCAGAGGTCAACATCAACAAGCCCACTGCTGTGAAAGtTTTGAAGACTGAAAAAGTGAAGTTTGCAGCATGTGGAAGAGACCACACAATCGTGTGCACATGGAGTGGGCAGGTTTATGGTGCTGGCAGTAACCAGGAGGGGCAGCTTGGTTTGGGACACTGTGATGACACAAACACCTTCCACCTGATTCATCCCTTCTCTGACCACGCACCAATCAAAATGCTCGCTGCTGGCTGCAACACCTCAGCTGCTCTGACAGAGGAAGGCAGGCTGTTCATGTGGGGTGATAACTCGGTTGGCCAGATCGGTCTGGGGGCAGAGAGCTACGCCTCAGAGCCTAGAGAGGTGATGGTGGGGCAGTCAGTGGCCTGGGTGTCCTGTGGATACCACCACTCAGCGTTCGTCACAGTGGACGGGGACCTCTACACGTTTGGGGAGTGTCGGAACGGAAGGCTGGGTCTATTCCATGACCAGCTGGCCAATCACAGAGTCCCTCAGCAGGTGGAAGGCATCCAGGATCCGGTCATCCAAGTGGCCTGTGGAGGGGAGCACACAGTGGCACTCACAAAGGAGGATGTGTACACGTTTGGGCGGGGTCAGCATGGTCAGCTGGGCCACGGGACCTTCCTGTTCGAAGCACATCTGCCCAAAGCACTGGTCCACTTCCGGAACGGCAGAGTCAGTCACGTCACCTGTGGAGAGAACCACACTGCTGTGATCACAGACAGTGGGATTCTGTACACCTTTGGGGACGGTCGCCATGGTAAACTAGGACTGGGGGAAGAGAACTTCACCAACCAGTTCAGACCAACACTGTGCCCACGCTTCCTCAAATACAGTGTCCAGTCAGTGGCAGGTGGCAGCTCTCACATGCTGGTGCTGGCTATGCCCAGACCCCCAGAGGTTGAGGAAGTGGTGATAGAGGAAGATGACGTCACAGAGACCATTCTGGAGACTCTGGAAACCTACACTGAGCTGCTCATGATGGATCCCTCCCTCCTCATGTCCAACCCACCGACTGCACCTCCTCTCTGGACCCTGTCTGCTAGGGCCCGCCGCAGGGAGAGGGAGTGTTCTCCAGAGCAGTTTGGCCAGATGTTCCGTAACCTTCCTCCTCTGATGTCTGGCTTCTTCAACACCTCCCTTCCCGTGTCCAGGAACATCCGCATCTCCAGAACACCATGGAAagacccctccacctcctcactgTCTTCCAATCCCTCCTCAAACAATGcccccagtccctctctgtcactcaaaCCCAGAGGCAAACCCCCTTTAACACCATCACGGTCACCCCAATTCACATTCCCAGACCGTCCCAGCCCTTCACTCTCCTCAAAGTCCAGCCCTAAGAAGAAGAAGCCCACCCAGTCAAAATCACCAAAATCTACATCTAAAGAATCCAGTAGCCCCTCACAGTCCTTCATATCCATGCCTAAACTCATCCCCGACCCCACACTGTCCCCTAAAACCCCCTTTAAGAAGCCCACAGATTACAACCAATCCCCCAAAACGCTGTCTAAGGGGCACCCCAGCCCTTCTCGGAGTCCCACCTCACCACAGACAGATAGGAACGAGGACACAGTGACAGAAGCCCCTGACAGCCTGATGCTCATTGAGAATATGGAGGATGAAAAGGACACGTTGTCAAACCTGGTATCACTATCGAGAGGAGATTCTGGCAATGAGACTGGGACTACATCTGCAGAGCACAAGGATAAGGGACATAAAAAGGGTAGGGTTCTTTGGAGAGCTgtgaaggaggcagagaggaaggtTGAACAAACCCTGACCAACAGGAAGGAGGAGCTACCTTCCCATGAAGCCCTTCCCACCGAGCTCCAGAGAGGTTCCAGTTTGAATTTGTTGAAGGCAGAGGCCAAGCCCACAAAGAGTCCCAAACCACTAAAGACCCCTCAGACCCCCCAAACCCCAGCCAGGGGCAAGGAGAACATCACTTTGACATCAGAAAAGGCTGGCCTTAAAGTGAAAACCAGTAAACTAGAGAGCAATCTTCAAAGTACAGGTAAAGCAGAGGCTAAGCTAAATACACCTGCAAGGAAACAAAGCAAGTTATCTGTATCGAAACCTAGCACTCCTAAACACAGTCAGATCCAGATATCTGTGTCTAAACCCAGCACTCCAAAGCATGGTCAAAGCAAGCTGTCTGAGGTGAATAAAGGTACAGAGATGAAAGGTAAAGGCCCTGTAAAGATCAGAAGTAAGGAGACCGAGGCGACCAGCACTCCCATCAAAACGAAAAGTTTGGAGTCCAAAGACAAGAAATCAAAAATTGCAGAGGAAGATACTAAAACTATTGAAGTTCAAAATAAACCACTTCAAGGGGTCAAGTCCGCTCCAGTCAAAGTTAAAGGTAAACAATTAGAGGTCAAATCCACCCCTGTGAAAAGTAACATTCAAGAGGCCAAATCCTCTACAGTCAAAGTTAAAGGTCAACCTGTGGAAAAGGAGCCAATTCCAAGTAAAACTGTGGCTGAAAGCACTCCTTTGAATGTAAAGAGGATTCCTCAGGAGGTATTAGATAaaacatctgaaggtaaaatCACTCCAATAAAGGGACAAAGGAAGACAAAAGAGGTGAATGAACAAAAGACTGGAGAGTCTATTACTCTCAAAGAGTCAGGGAAAACAGAGGGGAAGAAAATGGCAGTTAAAGATAAAGGCAAAGTCACAGAAACAAAAAGTGCATCCATCAAAACAAAACATGTGCCTGAACCTGAAGAGGTTAAAGCTAAATTAACTGAGTTGAATGGAACCCCGGTGAAACTGAAAAGCAAGCCAACAGAGGTTTCCAGCCAACCAATCTTAGTAGAACCTACCTCAAAGGCCAAATCACCATCCGCATCACTGTCATTATCAGATGCAATGCCTCAAAATGCTTGGGATAAGAAGTCAGCGAAGTCTGAGCTTAGAGAGCCACTGGCTGTCTCACAGGTCAAAGATAGAGTGGAGGTCCCAGGGGAAGATACCATTGGTGAATCCCAGGAGGGGGAGCCTGGCTGGGGAGGATTTCTCAGCGATGCAGCCTCTCTCCTTCCAGCCGTGGGGGTGGCAGGCGTAGCCATGGGGGTCTTGAGTGAGGCGGTGACAAGTGTGAGGGGGTTTCAGTCAGAGAGTGACACAGCCACTTCTATCCCTCCTCGGCGGTCCAGCCGGGTAGAGAGGTTCACCAAACAGAGCGCCATCACCCAGCCTTCCGCCTCCTCCTCTTCAACATCAGATCCCAGTGCAGTAGCGCAAACAAACAGGACCTCCATCTGCATCAGTGTTCTCAGGAATTCTGATCAGGAAGCAGGGAGCAGGAGTTCTGAGAAGAACCCAGACACCACAGAGGATGCTAGTGACAGGTCGGGAGGTCAGGCCGAGGTTGACGACAATGAGAACACTAgtagaggtcaaaggtcagaggaTGAGGATGATGAACATGAAGATTTcacaaagagacagggagaggaggatgacagGAGTAGTGAGGGtctggaagaagaagaggaggaagaggatgacagGAGTAGTAAGGGACTGGAAGAGAGCAGTGAACAGAACGAAGGGGGAGAAGCAGAAGACAGTGATTCTGTggctagcagagaaggagaggaggatagagaagagaagagtgaaGAGAGCCAGGGTGCGGAGGGGGAGGAGAGCAAAGAGAGTGAttctgaggggagaggagaggaggaggagagcaaaGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTCtcaggggacaggagagggggaggagagcaaAGAGAGTGATTCtcaggggacaggagagggtgaggagagcaaAGAGAGTGATTCtcaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagtaaAGAGAGTGATTCTGAGGCAAgcctagaggaggagggagaggagaaaagtgaagagagtgatggggaaggagaggaggcagagagtggTTCTGGGACaagtggagagggggaagaggaggataaGAGTGAAGAAGAGTCCAGTGATGAAGAGATTGGGGATGAAAACaaagaggacaaggaggagggtGGTGATGAATCAGGAAGTGAGGCTGAGAGCAAGAGTGAGGGATCagcagaagaggaggaagatgaacaAGCAGAAGAAGCAGAGAGTGAAGAAAGTAAAGCTACTgagtcaggagaggaggaaggagagggagggagtggaacagatgaggaaggagagggagaggataagGAAGGTTGTGAaagtgaagaagaggaggaggaggcaagtgtaagtgaggaggagggagaagaggatgaCGATGAGGAAAATGGAGCAGAAAGTGGAGAAGGTGAGGGCAAtgtaggagaagaagaagaggaagcagTTGAGggtgaggaagaagaggatgaaaaTGAAGGTGAAGAGGAGAACGGTGAAGTCGAAGAGggcgaggaggaagaggagggaggagaggaagaggaggaatatGCTAGTGGAGAGGAGGAACTTGAAGATGAAAaatgtgaggaagaggagggagaagaagaagatgagggGGAAGAAGAAGATGAtaaaggagaaggggaggagggagaaggggaagaggaggaagatggtgAAAAACAGGAAGATGAGAAAGAGGAAATAGAAGTGAGAGAGGAGGAAGCGAACAAACAAGAAGAGGAAAGGGAGAagcaagaggaggaagagaaggaagaagaaAAAGATAGACAGGAAGTAGGTGGaaaagacacagagggagaggagggtggaaaaaggggggaggagaagggaggtgaAAAAGAatggaaagaaaataaagaaattgATGGTGAATTAGAAGAAGAAGCTGCAGGGGAACAGAAAGgggagatggaggtggaggaaacgggagaggaagaagatgaagaggaaggagaagaagaggaggaagaagatgagggagaggaagagaaagatagtaaagaaggagaagaggACAAGGAGCACTTTAACACCTTTATGTGGAGACACCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330330 lncRNA upstream 10628 69699748 ~ 69701720 (+) False G291331
TU330329 lncRNA upstream 10628 69701352 ~ 69701720 (+) True G291331
TU330320 lncRNA upstream 18099 69694015 ~ 69694249 (+) True G291326
TU330148 lncRNA upstream 70318 69563664 ~ 69642030 (+) True G291163
TU330267 lncRNA upstream 175090 69534421 ~ 69537258 (+) True G291274
TU330361 lncRNA downstream 8881 69740538 ~ 69740934 (+) True G291353
TU330362 lncRNA downstream 9323 69740980 ~ 69741802 (+) True G291354
TU330364 lncRNA downstream 12587 69744244 ~ 69744512 (+) True G291356
TU330365 lncRNA downstream 13534 69745191 ~ 69745409 (+) True G291357
TU330370 lncRNA downstream 21182 69752839 ~ 69753077 (+) True G291362
LOC118964360 mRNA upstream 35685 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 71625 69634580 ~ 69640723 (+) False LOC110520479
XM_021597826.2 mRNA upstream 71625 69634850 ~ 69640723 (+) True LOC110520479
XM_036975028.1 mRNA upstream 77045 69625762 ~ 69635303 (+) False LOC110520478
XM_021597823.2 mRNA upstream 78076 69625761 ~ 69634272 (+) False LOC110520478
XM_036975033.1 mRNA downstream 102 69731759 ~ 69769646 (+) True LOC110504579
XM_021597835.2 mRNA downstream 130237 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 130365 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 130365 69862022 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA downstream 130371 69862028 ~ 69867877 (+) False LOC110520485
TU330321 other upstream 16512 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 81979 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1487042 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1949925 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2030226 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 130403 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 187525 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 218010 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 325883 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 845461 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile