RNA id: XM_036975033.1


Basic Information

Item Value
RNA id XM_036975033.1
length 3367
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110504579
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69731759 ~ 69769646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgatgttgaatcaacatgggaaactgattggatttgcaaaatgTAACCAACTTAAGGGAATTTCCTCTTTTTCCTATTTTTCTTttcacctaaatccaatgacgtggtgcattttttaaatgttgatttcacgttgaattcacgttagttgacaactcaaccaaatggaTGTTGAAAttatgtctgtgcccagtggggtgtatgtgtgtttgtgtatactgtatgtccaGCATTGATGTATAATTTAGGTGTTTGAGATGCTTTTATTTGGTTGGGCTTTTAGTTTTCTTTCAAGTTGGGGAATGTAGGCTACTTCCCCAGCAACACTGGCAACTAGACCTAAATGCGTAAGCTATTCTGAGTCACTTTGTTTTATTTTCTAATTATTTGTTTGAATGGGTTGCAGGGGCTATAGTTCAGTGTTGCTTCACTCAGCTGTGACGCCCGGGCCGCATGCCGAGACTCAGGCCAGATTCGATTAGGATCCATTCGGACGGAGGAAAATCCTCTCGTTTCTGGAGCAGTAGGCGGGTCTTTGGAAAGTTTGAATGCGATGGAAATGTTCTTATACTTTCCAAAGATGCTGAAGGGTGTCCCGTGCGTGAATATGGACACATGGCTGGTAGTGTCTCTGTTCGTGTATGTCCAGTTCTGCTTCAGTTTAGACTATGAAGGGTCGGCCTACTATGTCTATGGAGATGATGAAGACACATATGCTCATAGAAATGGAGGGACCCCTTGGTGCGCCCCCATCAAGGTGAAGCACGGCAATGTGAGCTGTCGCAGTCCCGGCGGGGAATACTATGGGAACGTGATGGGATCGCGCTGTAAGATCCGCTGTAAGTGGGGTTACGAGATGCAGCATGGACACGCAGAGGTGGTGTGTATGGCCAGCAAACACTGGTCAGGGAGCTACACCTGCAGGGAGATTCGCTGTCCTAAGCTGCAGATGCCTGCGAATGGGGGCTATACGTGTTCAGACGGATCCTACCTTAACTCCCGCTGTGAGTTCTTCTGCTCCCCTGGATACAATCTGAAGGGGCCCAATACTGTCACCTGCCAGTACCACAAGACCTGGACCTCAGGAGAGAGCGTCTGTGTGGaTGTTGACATCCCAGTAATAAAGTGTCCTAACCTGAAGGAGAAGACAGCAGAGCCAAGCAGGCTCACAGCCAGGGTGAGCTGGGACACACCAGAGGGCAAGGACACGGCTGATGGCATCCTCACCGATGTTATATTGAAAGGGAAGCCTCCTGGACCCTTCCCTGAGGGTCTCCATAAGATGTCCTACACCGTCTACGACCACGCCGGGAATAAGGGCAGCTGCCGCTTTTCTGTCAGAGTACGAGTGCGTCGCTGCAGCCCCATGACCCCCCCAGACAACGGTTTTATGAAGTGTGATAGCGATGGTAATAACTATGGAGCAACCTGTGAGTTCAAGTGTACAGGAGGGTATGAGCTGCAGGGCAGCGCTGCGAGGGTGTGCCAGTACGGCCTCACCTGGTCTGGCACGGAAACCAACTGTACAGCTATGAACATCAACGTGGGGGTGCGTACGGCCTCAGGGCTGCTGGACCAGTTCTATGAGAAACGACGCCTCCTCATCATCTCTGCTCCCACTGCTGCCAATCATTACTACAGGTTCCAGATGACTGACCTacagCATGCCCAGTGTGGTCTGGACCTCAGGCATGTGACAGTGATTGAGCTGGTGGGGATTTACCCCGCACAGATCGGCCGTATCCGCCACAGACTTATCCCTCCAGGGCTGGCCTTACAACTCAGGTTACTGCTCCAGATCTCCCATAATAACTTCAACATGGTGATGATTGACAAGCAGGGGATGGACAGGGAGCGCTACACGTACCCCATCACCTCCGCCCAGATCTTCACCACCATTGACACATGGCAGGGACGCGTAGATGAGAtggtgcagcagcagcaggaggcagGCCACACCTGCCAGTAGTACAACAGCTCAACAACGCCCTCACCCCAAATAATCCCCCTGCCCCGAACCAGAATCATATAGAGAGTGGCGCCAGGTTTTACAACTGCTGCCATGTTAGCGTCTTCATTCTTGCTGTAAACAATCACAACAGAGCAGTGTTTTGTGTTTAATAACAGACATTTTTATTTGGGATAATTATGTGTATCCAAGTGTGTACTGTGTTGTGGTGTCAACAAATTGCATATCTGCTTTCACTGGACATCTTCACAGGTTTAGAAAACTTTCAGCATAACGTGGAAGCGTCAATATTCACTTAGCAACGGCTATGGAAGAGAAAGTGCCGCTTTCGTTCAGACAATGCGCATtgacccaactctctctctctctctctctctctctctctctctctctatatatatatatatagatatatatatatatatatatgactctGCCCGCAACTTTCTCTTTACACCCCCACCCCAGTCCTCCCCATCTCAACAAAGACCCTTCTGTCACTTAAACCCAATTTACTACTTAAACTAAACTGTCGCTCAAGCTTACTACCTGAACCCATGACTCCCATCCTCCACTTCCCCATATCAGACCGCAGCTAGTCAACTTGTCCCTCACTGGGAGACTCCCTCAAATGGTTCAACCCTGCATTTCCCACCAATGTAACGCCTTTCAGTACTTAAAGACGTCCTCCAGCGATGTTTGGagttttactgttggaaacagtTTCCCCGTCTATAAATACAGTAAACACAACTTTTGAGCAAAatagttgtcacaccctgatctgtttcacctgtctttgtgcttgtctccacccccctccaggtgtagcccatcttccccattattccctgtgtatttatacctgtgttctctgtttgtctgttgccagttcgtcttgtttgtcaagtcaaccagcgtttttgtattcagctcctgcttttccccagtctctcttttctcgtcctcctggtttttgacccctgcctgtcctgaccctgtatgGCAACCCGCCTGACCAAtctgcctgaccctgaacctgcctgccgtcctgtacctttgccccacctctggattaccgacctctgcctgacctgaccctgaacctgcctgccgtcctgtacctttgcccctgttgctgtaataaacattgttacttcgacacggtctgcacctgggtcttaccttgattcctgaaaATATCAGGTGTTGACTGAGGTGAAAAGAAGACtgttccacaacaaaacctaatacacacaatataTTAAAGGAATAAGAATAtagaagtataaaatatatggatgagcagtgacagagcggcgaAGATGCAATAGagagtaaagaatagatagtgaaggatacagtatacagtatatacatctgagatgagtaatgt

Function

GO: NA

KEGG:

id description
K23818 SRPX; sushi repeat-containing protein SRPX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330353 lncRNA upstream 10973 69720008 ~ 69720786 (+) True G291345
TU330330 lncRNA upstream 30039 69699748 ~ 69701720 (+) False G291331
TU330329 lncRNA upstream 30039 69701352 ~ 69701720 (+) True G291331
TU330320 lncRNA upstream 37510 69694015 ~ 69694249 (+) True G291326
TU330148 lncRNA upstream 89729 69563664 ~ 69642030 (+) True G291163
TU330356 lncRNA downstream 3161 69772807 ~ 69776779 (+) True G291348
TU330393 lncRNA downstream 13934 69783580 ~ 69783838 (+) True G291382
TU330399 lncRNA downstream 21894 69791540 ~ 69791740 (+) True G291388
TU330401 lncRNA downstream 26473 69796119 ~ 69796425 (+) True G291390
TU330402 lncRNA downstream 27218 69796864 ~ 69797104 (+) True G291391
XM_036965146.1 mRNA upstream 102 69712348 ~ 69731657 (+) True LOC110504569
LOC118964360 mRNA upstream 55096 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 91036 69634580 ~ 69640723 (+) False LOC110520479
XM_021597826.2 mRNA upstream 91036 69634850 ~ 69640723 (+) True LOC110520479
XM_036975028.1 mRNA upstream 96456 69625762 ~ 69635303 (+) False LOC110520478
XM_021597835.2 mRNA downstream 92248 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 92376 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 92376 69862022 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA downstream 92382 69862028 ~ 69867877 (+) False LOC110520485
XM_036975040.1 mRNA downstream 92383 69862029 ~ 69867876 (+) False LOC110520485
TU330321 other upstream 35923 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 101390 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1506453 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1969336 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2049637 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 92414 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 149536 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 180021 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 287894 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 807472 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile