RNA id: XM_036975035.1


Basic Information

Item Value
RNA id XM_036975035.1
length 3761
RNA type mRNA
GC content 0.53
exon number 17
gene id sytl5
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69775632 ~ 69861001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGGAGCGGGGCTGTTGATACCACAGCTGTGATCACACGCCACAGAGGCGCGCCAAGAGACGGACTGCACAGGCTCCACCACCAGCCACTCTCACGACACACCAAGCCACCACTTGCTGTAGTGCAATTCTCAGGATCAGGTTTAGGCAGGCTGTGGACCAGTCTTTGGGGATACAGTAACTGCTGTGTGATTGGCGGTTTGTCTGATACAACAGAGAGAAACAAGATAAGGAGAAGAACATACTAGAGGAACCTTGGATAATCTGGAGAACGTCCTGCTTTACACAGAGACTATGATAACGCTAACAGAACGCTAAAGGAAACCGAATGGAATGCTGAGTGAGGTCATGTAGCTGCCCTCTGACACCCCTGCATGTGACTACGCCTTCTGCGTCACCCCGGCTTTTCTAATTGGCTGGTTTGGAGAGCGACGGACCAATGGAGAAGAGTGCTGAGGAGCTGAACCTCTCGTTCCTGCTGGAGCATGAGCGAGAGATGATCCTCGGAGTCCTGCAGAAGGATGAGAAACTGAGGAAACTAGAGGAGAAGAGGATACGGAAGCTGAAGAATGAGCTGGTGGAGATCAGGCGTAAGGGTTCGCGGCGCCCCCAAGAGGTTGGGGAGCGTCAATGCGCCCGTTGCCTGAAGGGCCTGGGCCTGATTTTCGACCGCGGGGAGCTCTGTGAGCAGTGTCTACAGCGTGTCTGCAGCGACTGTCGCGTGATGGCCCCTAAAGCAAAGCATTGGAAGTGCTCCATCTGTGCCAAAGTCTTGGAGCTGAAGGTGGTGACCGGGGAGTGGTTCCTAGAGGAGCGGTCCAAGCGGTTTGACAAGGGGACAGTGCTCAGCAGTGATGTGGTCAAACAGTCTATCATGAGCAGCCCCGCAGGAAGCCCCCATAGGAAGTCCCCAGTGCCAGCTGACTCACCTGAGAGGCCTGACACCCCAAAATCAGGAAGAAGTGCCGTGAGGAACCTGGTGGATGGTGCCAAGAGGAAAGGGAAAggGATATTGATGGATAAGAAGGGCAGCCGTCCCAGCCTGAAGCCAGAGAACGGGGTGCAGGGTAGGAGTGTGTGTGCTCCTGTCcccgacacagacacacacagcgtACGCAGTGCCCGGTCTGCACCACGCTCCACAACCCGCTCTGCGCCTCACTCACATAGGGGTAGTGTTGTGGCTCTGGAGTCTTCAGGGATACGTACTGTACCTAACAACCTGCGCTCCCAAACCCTGGAGAGGGACAGGTCCCCTACACCCAGCAGCAAGAGCAGGAGGccggACGGAGCGGAGAGCGTGGCTAGTTTCCGCTCCAGCGACAGCGTGTTTGACAAGATGTCCGACACCGTCACCGGGCATAGCTGGACAGGGTCTGATACCGCCCCACCCACCATTGCTGTCTCCAGGGCCTCTGTGTCATCAGatcgtAGTCGTTCTGAGGTGGACCTGTCTGTTCCTGGTTCTGCCAGTGATGAGGCCCTCAGTCTGAGGAGCCGCTCCGTTCCTGGGCTCAATGacacgGAGTTTGATGATAATGATAAAGACGAGGACATCGATGCTCTGATGTCGGCACACAGCAAGACCGCCAGCCGACGCATGAGCTGCGCTGTGTCTACGTCTTCTACTCCCGGCTCAGAGAGAAAATGGGGCTACCTCAGTGTTCCTGGCGACTCAGACGCAGAAACTAGCAGTCTGAACAGTATGATGAGTATGTACAGTGAGACTGGTGACTATGGCAACGCCAACGTGAGTGGCGAGCTGCTGTTGAACATCAGCTACAGCTATAAGACAGGCGCTCTTAACGTCCTGGTGAAGGAGTGTCGCAACCTGGCCACCGGGGATGAGAAGAGGCAACGCACAGATGCCTATGTGAAGGCCTACCTCCTCCCAGACAAGTCTCGCCAGAGCAAGAGGAAGACCAGCATCAAGACCAACACAATCAACCCTGTATTCAACGAGAACCTTaggTATGTGATCAGCCACTCCCAGTTGGAAACACGAACGCTGCAGCTGTCTGTGTGGCACCATGACCGCTTCGGACACAACAGCTTCCTGGGGGAGGTGGAGCTGACCTTTGACTCCTGGGAGTTTGACAGCAACACGGAGGAGTGGTACTCTCTGCAGCCCAAGCTGGACAGTAGTATGGACTCCACGCTCCAGTATAAAGGGGAGCTGACCGTGGTTCTGAAGTACATCCCTGCAGAGAAGAACCTCATGCTACCCCTGGACCAGGTCCAAGtgaAGAAAGGCTTTCTGAAAGGAAAGAAGACCAGCATCAAGCTGCCTAAAGGAGGTATGGTGGAACTTCTGGTCAAGGAGGCCAAGAACCTGACCTCTGTCAAGTCTGGAGGCACTTCAGACCCCTTTGTGAAAGGGTACCTGCTCCCTGACAACAGTAAGTCCACCAAGCACAAGACGGTGGTGGTGCGTCGCTCGGTCAACCCCCAGTGGAACCACACCTTCACCTACTGTGGCCTGCAGGCCGGAGACCTGAACAACGTGTGTCTGGAGCTCACCGTCTGGGACAAGGAGGCTCTGGCCAGCAATGTATTCCTGGGGGGAGTCCGACTCAACGGAGGGACAGGCCAGAGCTATGGGAACGAGGTGGACTGGATGGACTCGTACGGAGAGGAACAGCGGCTATGGCAACGCATGATTGACAACCCGGAGGTCCCCCAGGAGTGTACACTGATGCTGAGATCCAGCATGTGCAAGCACAACacatgagatggagggagggagggaaagaaggacAAAAgaaaaagggacagagagaggtggcagaAAAGGGAGAAACAGTGGAtggaaagggggggagagaaaaaaagagaagaaaagaaaGAGAAGGACATTGGTTGACAGTGCTCCATGTCCAAGCTCTATCCCGCAATACAGAGCTGATGACATCACTCCACTTCCTGACCCTTGAACCCTAACCTCTGAGCTACCCTGATCCTGCACTGGGGTTCATAGTCCTCTACCTGGTACAGAGGTCAACCAGTCATGCCTTACACACACATGGCCATACCCAGCCAAGACCAagcactgctgctactattactactactactactactactactactactactactactactactactactactactgtacattatGACATGTCCAGGTAACTGCTAAAATAatagaaacacttgagtaaatgagagaTACAAAGTATatatccctccaatagagttccagacactccTAGAaggtggtggcccaacgccctattaagacactttatgttggtgtttcctttattttggcagttacatgcaTGTAACATAATGAACAAGCACATTGTCCTTTGTATGATCTGATCTGACTATGCACaacactctcctctccctgtgttGAGACTACTTTAGGTAGAAGTTGTTCTTAAccccagatctaggatcagattgcTCTGACCTGCTCTTAACCATAACCATTTAGGGGGAAGATAATGTATCTGAACCCGCATCAGTGGCTCAGGGTAGCTTTTACCTAGGCTTTGACTCAATCAGAACCCGCGTTGGCAGACATCCGCTTAGCGGATGTTTTGTTTCGTGTCCACAATAAGCTAACGCATGGAGCCACCTGTGGATTTTCAGCTCTAACACAGTTACACTTCAGACACCGCCAAAACAAACGATATGGGGATCTAATAGAATCTAGTCCCTTCTCTCATAAGGTAACTTCTCCAAAGGCACTTAGGGGTTGATGCATGCTGAGTAGATTTAAACATTCCCATAGTATACTG

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330790 lncRNA downstream 3080 69770830 ~ 69772552 (-) True G291728
TU330842 lncRNA downstream 17765 69757608 ~ 69757867 (-) True G291775
TU330840 lncRNA downstream 18938 69756446 ~ 69756694 (-) True G291773
TU330834 lncRNA downstream 30789 69744549 ~ 69744843 (-) True G291767
TU330833 lncRNA downstream 31489 69743844 ~ 69744143 (-) True G291766
TU330883 lncRNA upstream 1057 69862058 ~ 69863570 (-) True G291812
TU330914 lncRNA upstream 10657 69871658 ~ 69878304 (-) False xk
TU330911 lncRNA upstream 13613 69874614 ~ 69878304 (-) True xk
TU330923 lncRNA upstream 31993 69892994 ~ 69894649 (-) False LOC110520487
TU330930 lncRNA upstream 32325 69893326 ~ 69895043 (-) False LOC110520487
XM_036975032.1 mRNA downstream 66463 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 66506 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 100622 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 100624 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 130893 69641266 ~ 69644739 (-) False LOC110520480
XM_021597838.2 mRNA upstream 14921 69875922 ~ 69903855 (-) False xk
XM_036975042.1 mRNA upstream 31950 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA upstream 31950 69892951 ~ 69895131 (-) False LOC110520487
XM_021583357.2 mRNA upstream 46304 69907305 ~ 69911161 (-) True LOC110504590
XM_021597848.2 mRNA upstream 66660 69927661 ~ 69933360 (-) True asb11
TU330123 other downstream 519088 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 924778 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1050718 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1058247 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1128012 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 119345 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 246539 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 859035 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1166618 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2042313 71903314 ~ 71903908 (-) True G293984

Expression Profile