RNA id: XM_036975040.1


Basic Information

Item Value
RNA id XM_036975040.1
length 1614
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110520485
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69861894 ~ 69870212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCTTGCCTCACAGAGTCGCTTTCTTTGATTATTTCCATCTCGGTAACAGATATTTAGAAAAAAACAACAGACTCGGTGAAGAACCTTGTCGAAAGAGGAGAATTTTGCTTTTAAAGCAATGGAGGAGTACAATTCCGGAGAGGAGGAGTCACAGGTGTCCTTCAACGCAGATGAGGCCAGTGTCTCAGTTAAAGAGTGTATTGAAGCCATCATTGGAGGACTAGATTACAACCAGAACAAAGTGAACCAGTGGACTGCCAGCATTGTGGAGCACTCTCTCACCCAACTGGTCAAGCAAGGGAGACCATTCAAGTTCATAGTGAACTGTGCCATCATGCAGAAGAGTGGTGCTGGTCTCCACACGGCCAACTCCTGCTACTGGGACACTGCTACTGATGagaccaccacagaacatcattGTGTGCAGCGCTGTCCgtgttgctgaagctgcaacatGATTAGACATTTGACTGAAAAGTGATGTTGACGAAATCCCTGGTTTGTTTAGTCAAAACATTCCCTATTTCCTCAGCCCTTGCTCTCTTTAGGTGACACATGTATGCATCACATGCAcgtgaccaatagggcctgacctatagcatatcataatcacatcaataaattggttataacaaactctgAACATTGTAACAcgtgacagcaaaatggatgcagaggGCGTGACAAATAAACTGGAAACGGGAACGTTTACTGGTTGTGCAGGAGGTAAAGGGGAGGTCAGATGTGTGGAGTACATGTGACTAGTTGTGGAAAACactggagatcaagaaaaagaaGGTATGGAGCAAGCTCTGTACATATTAAGTCTGTGTGTGCCAtacaggtgctgttagattacaatctAATTTTTCTGACCatttggaacaatgtaaacaaGTTATAAGCATTCCAGAGAGCcggttggaatgttttttttgtaaCGGCTTTATTACAACAGTCTCATTCATCCGTGAAATGGAACAGTTTAGGCCTATTTATTATTTACTCAAATTAGTCTTTGGtcgctttattttattttagaactAAAATGTTTGATTGCATTTCACATCATGAATGACTCGTATGCTGTGTGTCGACATGAAGAAATaaatgatttattgattgatacagtagcctgTATAACTATTGAAATACAGGCCTAAGTAAGTTATGGTATTAAGACTGAACAGGATGCGCTCTTAGGTCTGCAGCTtgatggtggttatacaaggcaACTACACTAAGAccactaatgataatgacattacttattattattataataataataacaataaggagaTCAAGGAAAAAGGAAAGTTATTTTTATTATAAATATTTCTGAcaatttggaacagtgtaaacaacaccaAATGTATGATAAATAATACCAGAAAGGCTGGTCTAACGAGAGGAAAAAcgtgtaaagcctttattacagcaaagatGAAAAATAGCagaatttgtgaaattgtttcGTGAGGCTTGGTTCTCGTGGAATCAATCAACCgaacactcaaacaggcaacgGAAGCAGGATCTttcttatttctgtagatatacagtaccagtcaaaagtttggacacatctactcattccagggttgttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330425 lncRNA upstream 24104 69837711 ~ 69837925 (+) True G291414
TU330422 lncRNA upstream 28974 69832750 ~ 69833055 (+) True G291411
TU330414 lncRNA upstream 44052 69817578 ~ 69817977 (+) True G291403
TU330415 lncRNA upstream 47661 69814140 ~ 69814368 (+) True G291404
TU330413 lncRNA upstream 47957 69813580 ~ 69814072 (+) True G291402
TU330389 lncRNA downstream 2980 69870856 ~ 69871336 (+) True G291378
TU330387 lncRNA downstream 3817 69871693 ~ 69946132 (+) True G291376
TU330451 lncRNA downstream 19935 69887811 ~ 69888217 (+) True G291440
TU330456 lncRNA downstream 25979 69893855 ~ 69894931 (+) True G291444
TU330509 lncRNA downstream 103822 69971698 ~ 69971933 (+) True G291490
XM_036975033.1 mRNA upstream 92383 69731759 ~ 69769646 (+) True LOC110504579
XM_036965146.1 mRNA upstream 130372 69712348 ~ 69731657 (+) True LOC110504569
LOC118964360 mRNA upstream 185366 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 221306 69634580 ~ 69640723 (+) False LOC110520479
XM_021583366.2 mRNA downstream 47934 69915810 ~ 69923807 (+) False LOC110504602
XM_036975046.1 mRNA downstream 112392 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 112395 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 189507 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 189526 70057402 ~ 70070470 (+) False LOC110520493
TU330321 other upstream 166193 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 231660 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1636723 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2099606 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2179907 67678862 ~ 67682122 (+) False G289486
TU330486 other downstream 51306 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 81791 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 189664 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 709242 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 709242 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile