RNA id: TU330914


Basic Information

Item Value
RNA id TU330914
length 6338
lncRNA type sense_over
GC content 0.42
exon number 3
gene id xk
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69871658 ~ 69903855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGGGCTGCACGATATTGGCAAAAACTCGAATTGTGATTTTTGGACCAAATATTGTGATTGTGATTTGACTTGCGATATAGATACAAAACCTTTGGCTGAACTGTTGGAATCGTTGAAATAGAATGACTTATATTAAGAAACAAAGTGGAAAGTAGCGTTGGCCTTGTTTGGAACTGTTGACTGCATTTGACCGACAGAACAGCATGCAAATGTATAGTGGGAAGCAGTCGCaatagtagagggagagagatgacgaACCGAGGCAACTATAAAAACGGACAATACACACAGCTTAGTGCCGTTTCAAAATATTGCATGCGATATGGATCTCTTGCGATATGGCTTTTGCAAATGTCAATATTGTGATTTGATGTGAATTCTATTAATTCTGCAGCCCTAGTATAGGGTCAGGAGTGTTCCTAAACTTGTGACTGAACCAGGAAGAGGCTTTCCTGTTCAGGTCAGGTGGTCTGGAAATACTCCTGGTCCTAgttatgtgccattcagaggaagGTGGACACAGAGCAACATTTGCTGTACTGTCTCCTTCTGTAAGTGCCATATGAACCCCTCTGTCCTACCTGTCAGTTTACAAtgaactagggttgcaaaattctgggaacttttcaaaaattccctggttttccaggaATTCTGGTTGGAGGTTTCCCCTATTTCCGGTTTATTCCCTCGTaattccaggaatcttccaaccaggatttctggaaaaccagggaattttgggaaagttacttGAATTTTGCAACTCTACTCTGAGCCGTAATCTGAACTGTACACTGAACCGTAATCTGAACCATACACTGAACCATACACTTAACCATAATCTGAACCGTAATCTGAACCATAATCTGAACAATACACTGAACCAGACACTGAACCATAATCTGAACCATACACTGAACCATAGCCATAATCTGAACTGTAATCTGAACCATAATCTGAACAATACTCTGAACCCTATGATCTTAACCCCATACCCATAACCTTATTCTAATGTGTGTCTCTAACCAAATCATTTGAACGCTATCATTCtgtttaacccttaacccctgtTCTGTTACCAAACCCCAAAACTGTAACCCCTTACTCCCCTAACCAATGCTGCAAAGGCAGTATCCCCTTGCCATGGAGAGAGACTACAGCTTCACTGTTAGTGTATAATGGAAGAACAGGCAATGTATGATATCATCCACCAGCCGGCTCTCTCTGAATTTAGCCAGGGGATGAGGTTAGGCAATGTACAGTGATGCTGACGAAGTAGTTCTTGTGAGAATGTCCTTACGCAGTCCGTGATGTTTATTCTACCTAAGCCAGTATTACCGACCAACCACAGACAAATCATTGGATGTAGGGATTCTTCAGCAACGGACTCAACTACTGACATAGtatcagtgtttcagtgttgaaCAGACTTTCCTACAACCAGAATGTAACTTGTCTGCAGCCTTTTCTATGGAAGTCAAGTCCTGGCGGTATGGACAGAACGCTACACTCAGACAGATTAAACTGGTCCGAAGTGAGTCTGCCACAATAGCTTTTCTAATGAGGTTTCCTAATTTGGTTATGCATTTCATAGAACTAAATACTTGTCTATATAGTCACTCacatgaatcaatcaatcaaatgtatttataatgccctttttacatcagcagatatacagaaacccagcctaaaaccccaaacagcaagcaatgcagatgtagaagcacggtggctagggaaaaactccctaaaaaggcaggaacctagaagaaacctagagaggaaccaggctctgaggggtggccagtcctcttccaaTGGGCTTATACATTTCATTACTACATTACTCATTAGAATTGACCAAGTATTTGGGATTTAGTGTATTTACAGTGTTTCACATTGGCATGGGGGTGTGCATGTACTGAACTGGACCCATCACCCACCACATACACATTTTAAAGCTTTGTGTGGTGTAATGTAAATATTGGGTTGGGTTTACTGTTTTTTTCCTTTGTACACTCTACTCTTACGGCTGCGACCAACGCTGCTTTTATACTTCCTTGAAAAAGAGCTTAATCATTGATGTGCGTGCTGCTTCTGTGGTGTTTCTAAGTGCTTGTGACAAGGGTGACAGTGATTTCTAAGCCAGCACTAGAGGACATGTAAAGAGACCCATCTCTCATCAAACAGACAGGAAACGCATAACTGTATTTCAGACAGGAAACACCAAGTGTTTGTTTTACCATTTATTCTAAAAGATTTCAATACAAGCAATACGTTAGTCTTGGCATTAGAGGCTCTGCTCCTTCGGGGTAGCTCACTGCCAGAGCATGCATAATGTTaagataataataattacaggcagagagaaaggtATTCTGTACCATTCCTCCTGCAGGAAGGGAACAGAACCAAGCAGGTAGACACGGGTGGGAAAGCAGAAAACAGACATGCATGGCGAGTAACGCATGTCATAGCAATAGCATGTCAGCAAGAACAGCAGTGCATAGTTTGTGTGCAGCAGCCATCAGAGAAAGTGTGTGTAGAGCCTGGTGGACTAAATAGACTGCCATATTAGAGTGATGAATCTAATGGGTGAAATATCAGCTACGGTTGCGCTTGGTGTACTGAACCCACCGCATGACCACGGCCATCTGGGCGCCTTCGAGCGGATCACATTTGTCAAGTCGGTGACCATCATCAGCACCTTTCAAAGTGTGTTACATTATAGAGACAAAAATTGTCCGACTTGCATGAACTTTACATCAACCATGTGATCAAAGGTCGACTGCTTGAACTTTACAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTAAAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTACAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTAAAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTAAAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTAAAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTACAACAACCATGTGATCAAAGGTCGACTGCTTGAACTTTACAACAACCATGTGATCAAAGgtcatAAAGTTTCAACTGCAGTCGACTTCGATTTTCTGCAGTTGCTCCTCACCAGCTGCAACTTGCCGCCATCGCCTGCATTGTGGGAGTCACTATTTGTCAACCAATCATGACAATATTTTTGTTTGACCCATGCAAACAGGACCATAGATGTGACTAAACAGGAAGCAACTTTGCTACGATTCATATGtacggtgcatttggaaagtattcagaccccttgacttttcccacattttgctacgttacagccttattctaaaattgattccccccccccccctcataaatctacacacaataccccattttgacaaagcaaaaactgggttttagaaatgtttgcaaatgtataaaaataaaattaaaaaaaatatatatatatataatttacatatatataatttacataggtattcagactttttactcagtactttgatgaagcacctttggcagcgattacagccttgagtcttcttgggtatgacgctacaagcgttGGACagttgtatttggggagtttctcccattcttcgctGCAGATCCTCTTCGagatctgtcaagttggatggggagtgttgctgcacagctattttcaggtctcagagatgatcgatcgggttcaagtccgggctctgtctaggtcactcaaggacattcagagacttgtcccgaagccactcctgtgttgtattggctgtgtgcttcgtgtcgttgttctgttggaaggtgaaccttgtccccagtctgaggtcctgagtgctctggagcaggttttcatcaaggatctttctgtacttggctccgttcatctttccctcgatcctgactagtctcccagtccctgcctctgaaaaacatccccagagcatgatgctaCCACTAACATGCTTCACTGCAGGGACGGTGCCAGGTGTCCTcaagacgtgacacttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaactccaagtggtctgtcatgtgccttttactgaggagtggcttccatctggtcactctaccataaaggcctgttttgtggagtgctgcagaggtggttaaccttctggaaggttctccaatctccacagaggaactctggagctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggcctggcagccagctctaggaagagtcttggtggttccaaacttcttccatttaataattatggaggccactgtgttcttgggaccttcaatgctgcagaattcttttggcacccttccccagatctgtgtctcatcacaatcctgtctcggagttctacggacaattccttcaaccacatggcttggtttttgctctgaaatgcactgtcaactgtggaaccttatatagacaggtgtttgtctctccaaatcatgtccaatcaaatgaatttaccacaggtggacaccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaagggtcataattgtttttcttccacctttatttaacaaggtaggccagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaacaacaacacagttacacataaacaaatgtacagtcaataacacaatataaaaatcaatgtacagtgtgtgcaaatgtagaagaatagtgaggtaaggcaataaatatgctGTAGAGGcaaaaataatgacaatttagcattaacactggagtgatagatgtgcagatgatgatgtggaggtggggatactggggtgcaaaagagcaagaggataaataacaatttgggaatgaggtagttgggtgtgttatttacagatgggatgtgtacaggtacagtaagctgctctgacagctgatgcttaaagttagagagggagatataagaatCCAGCTTCAgtcatttttgcaattcattccagtcattggcagcagagaactggaaggaaaggcggccaaaggaagtgttggctttggggatgaccagtgaaatatacctgctggggaACATGCTATggttgggtgttgctatggtgacctgtgagctgagataaggcggggctttacctagcaaagacgtatagatgacttatggaaataaggtatttctgtttttgctaaaatttctgaaaacctgtttttgctttgtcattatggggtattgggcgTAGATTAATTataattgttttttaaaatccGTTTTAtaataagtctgtaatgtaacaaaatgtggaaaaagtcaaggggtctgaatacagtagatatgtacaaATGAATTTGTTTGAGGCTCTCTCACCAATTGATATTACATGCATATATTTAattttgtgagtgtgtgatatgggGGTTGGAGACGTGTTTATTTTGATATTACAAAGAACAACTTTTATAAATgatggcaacactgccatgttgtgctgAGCGTTGCTGTTGGAAAGCCACATCAGTGTCCGACTTTCGGCTGTAGTAGATGCACCTCCCCTGACTTCACTTCTTGACTTTTGTCTGCAGTCGGTTGCTTTAGCCttaccactctctctccatctcacactTTTGCACGTTTCCAGCACGCTTTGGTTTTGATTCAGCTTTGTAAGGGCAATAGTCAGCAGCAGCTGTTGTTGATGTGGTGCCAGTGAGATGCTTTGATTGGATGTCTATGTGTTTTGCTCATTCATGCTGTGCTATTGTATGTCTCTGAGTCTGTCTGGTGTTTCATTATGTATGGAAATATACACACAGACTTGCACAATATCTATTTGAAATGTGTTTAATATTTGTCATGGTAAAAAGTGTCTTTGTATAGCTTGAATCTTacatgtattaatgtgtgtgttgtatatttattttatatgtgTCTTTATTTGCACTAGCTCTTCTTTTGCAATGCAGTTGCACAGGGCTTGATGACATTTAGTATCATATGAATGctacatatagtttttattaaaaAAGACAATCTTTGAAGCCAAACAGAATTTTTGATATCTATAAAAAtctaatgaacacacacacacagtattgtgAATCAATTTCAGAGAGAATGATTATTAAAATATGAAATTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330883 lncRNA downstream 8088 69862058 ~ 69863570 (-) True G291812
TU330901 lncRNA downstream 11347 69860109 ~ 69860311 (-) True G291829
TU330899 lncRNA downstream 16869 69854480 ~ 69854789 (-) True G291827
TU330877 lncRNA downstream 43998 69827299 ~ 69827660 (-) True G291808
TU330868 lncRNA downstream 58819 69812587 ~ 69812839 (-) True G291800
TU330923 lncRNA upstream 14690 69892994 ~ 69894649 (-) False LOC110520487
TU330930 lncRNA upstream 15022 69893326 ~ 69895043 (-) False LOC110520487
TU330927 lncRNA upstream 15063 69893367 ~ 69895043 (-) False LOC110520487
TU330924 lncRNA upstream 15276 69893580 ~ 69895043 (-) False LOC110520487
TU330926 lncRNA upstream 15276 69893580 ~ 69895043 (-) True LOC110520487
XM_036975035.1 mRNA downstream 10657 69775632 ~ 69861001 (-) True sytl5
XM_036975034.1 mRNA downstream 10658 69775632 ~ 69861000 (-) False sytl5
XM_036975036.1 mRNA downstream 10659 69775632 ~ 69860999 (-) False sytl5
XM_036975037.1 mRNA downstream 56850 69775632 ~ 69814808 (-) False sytl5
XM_036975032.1 mRNA downstream 162489 69698559 ~ 69709169 (-) True otc
XM_036975042.1 mRNA upstream 14647 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA upstream 14647 69892951 ~ 69895131 (-) False LOC110520487
XM_021583357.2 mRNA upstream 29001 69907305 ~ 69911161 (-) True LOC110504590
XM_021597848.2 mRNA upstream 49357 69927661 ~ 69933360 (-) True asb11
XM_036975044.1 mRNA upstream 55393 69933697 ~ 69938854 (-) False piga
TU330123 other downstream 615114 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1020804 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1146744 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1154273 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1224038 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 102042 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 229236 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 841732 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1149315 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2025010 71903314 ~ 71903908 (-) True G293984

Expression Profile